EY736107

Overview
NameEY736107
Unique NameEY736107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BORA1 (50S ribosomal protein L1 OS=Bordetella avium (strain 197N) GN=rplA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.596e-26
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKRAAAIAQKIDRTKLYP AEALT VKETA AKF+ESIDVAVQLGIDPKKSDQLVRGSVVLP
Sbjct:    1 MAKLSKRAAAIAQKIDRTKLYPVAEALTLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BORPD (50S ribosomal protein L1 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKRAAAIA+KIDRTKLYP +EALT VKETA AKF+ESIDVAVQLGIDPKKSDQLVRGSVVLP
Sbjct:    1 MAKLSKRAAAIAKKIDRTKLYPVSEALTLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BORPE (50S ribosomal protein L1 OS=Bordetella pertussis GN=rplA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.871e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKRAAAIAQKIDRTKLYP  EAL  VKETA AKF+ESIDVAVQLGIDPKKSDQLVRGSVVLP
Sbjct:    1 MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BORPA (50S ribosomal protein L1 OS=Bordetella parapertussis GN=rplA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.871e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKRAAAIAQKIDRTKLYP  EAL  VKETA AKF+ESIDVAVQLGIDPKKSDQLVRGSVVLP
Sbjct:    1 MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BORBR (50S ribosomal protein L1 OS=Bordetella bronchiseptica GN=rplA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.871e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKRAAAIAQKIDRTKLYP  EAL  VKETA AKF+ESIDVAVQLGIDPKKSDQLVRGSVVLP
Sbjct:    1 MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_NITMU (50S ribosomal protein L1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MA+LSKR  AI++K+DRTK YP  +AL  V+ETA+AKF+ESIDVAV LGID KKSDQ VRGSVVLP
Sbjct:    1 MARLSKRLKAISEKVDRTKYYPLQDALNLVRETAIAKFDESIDVAVNLGIDAKKSDQAVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_RALPJ (50S ribosomal protein L1 OS=Ralstonia pickettii (strain 12J) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKRAAA   K++RTK YP  EAL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRAAANKAKVERTKFYPIDEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_HERAR (50S ribosomal protein L1 OS=Herminiimonas arsenicoxydans GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAKLSKR  A   K+DRTK YPF  AL  +KE A AKFNESIDV+VQLG+D KKSDQ+VRGSVVLP
Sbjct:    1 MAKLSKRVKAFKAKVDRTKAYPFDNALALIKECASAKFNESIDVSVQLGVDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_RALSO (50S ribosomal protein L1 OS=Ralstonia solanacearum GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR AA   K++RTK YP  EAL+ VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRVAANKAKVERTKFYPIDEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
BLAST of EY736107 vs. ExPASy Swiss-Prot
Match: RL1_BURTA (50S ribosomal protein L1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    3 MAKLSKRAAAIAQKIDRTKLYPFAEALTXVKETAVAKFNESIDVAVQLGIDPKKSDQLVRGSVVLP 200
            MAK+SKR  A A K+DR KLYP  +AL  VKE A AKF+ESIDVAVQLGID KKSDQ+VRGSVVLP
Sbjct:    1 MAKISKRRQAFAAKVDRQKLYPIDDALALVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLP 66          
The following BLAST results are available for this feature:
BLAST of EY736107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BORA12.596e-2693.9450S ribosomal protein L1 OS=Bordetella avium (stra... [more]
RL1_BORPD1.683e-2590.9150S ribosomal protein L1 OS=Bordetella petrii (str... [more]
RL1_BORPE2.871e-2590.9150S ribosomal protein L1 OS=Bordetella pertussis G... [more]
RL1_BORPA2.871e-2590.9150S ribosomal protein L1 OS=Bordetella parapertuss... [more]
RL1_BORBR2.871e-2590.9150S ribosomal protein L1 OS=Bordetella bronchisept... [more]
RL1_NITMU6.194e-2072.7350S ribosomal protein L1 OS=Nitrosospira multiform... [more]
RL1_RALPJ1.057e-1975.7650S ribosomal protein L1 OS=Ralstonia pickettii (s... [more]
RL1_HERAR1.380e-1972.7350S ribosomal protein L1 OS=Herminiimonas arsenico... [more]
RL1_RALSO3.074e-1974.2450S ribosomal protein L1 OS=Ralstonia solanacearum... [more]
RL1_BURTA3.074e-1974.2450S ribosomal protein L1 OS=Burkholderia thailande... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736107 ID=EY736107; Name=EY736107; organism=Citrus sinensis; type=EST; length=495bp
GCGGGCAGCACGACCGAACCGCGGACCAGTTGGTCCGACTTCTTCGGGTC
GATGCCCAGCTGCACGGCCACGTCAATCGATTCGTTGAACTTGGCGACAG
CGGTTTCCTTGACCANGGTCAGGGCTTCGGCGAACGGGTACAGCTTGGTG
CGGTCGATCTTTTGCGCAATGGCGGCGGCGCGCTTGCTCAGTTTTGCCAT
GATTAAATCCCCTCAACCGTGATGCCCATGCTGCCGGCGCTGCCANCGAT
CGTGCGGACGGCGGCGTCCAAATCAGCGGCGGTCAAAATGGGGGCCTTGG
CCTTGGCGATGTCTTCTAGCTTCCCCCGGGTTCACNTNCCTACTTTGTGG
GATTCCAGGGGGACGAACCCTTTGGGCGCGGCGGGCGTGGTGGGTGACGA
CANCAAGGGGGGGGTCTTCGGAACCACTGGGACGCCGGTGTGGCGGAGCG
GGGGGGGGCGCGGGACGCGGGCCAAGAACACTGGCGGGGTCCTTA
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