EY736019

Overview
NameEY736019
Unique NameEY736019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736019 vs. ExPASy Swiss-Prot
Match: FKBP1_ARATH (Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic OS=Arabidopsis thaliana GN=At1g20810 PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 8.236e-75
Identity = 142/190 (74.74%), Postives = 162/190 (85.26%), Query Frame = 3 
Query:   81 SIPISRR-AAAILISSLPFS--VISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNPNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATLDLKLNIELLQVKP 641
            S+PISRR A+ IL+SS+P +   +  P  SEARERR++K IPLE+Y T  +GLK+YDI EGKGPVA +GST QVHFDC +R ITA+S+RESKLLAGNRSIA+PYEFKVG  PGKERKREFVDNPNGLFSAQAAPKPPPAMY +TEGMKVGGKRTVIVPPEAGY +K MNEIPPGAT +  LNIELL+V P
Sbjct:   40 SVPISRRDASIILLSSIPLTSFFVLTPSSSEARERRSRKVIPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHFDCRYRSITAISTRESKLLAGNRSIAQPYEFKVGSTPGKERKREFVDNPNGLFSAQAAPKPPPAMYFITEGMKVGGKRTVIVPPEAGYGQKGMNEIPPGATFE--LNIELLRVTP 227
The following BLAST results are available for this feature:
BLAST of EY736019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FKBP1_ARATH8.236e-7574.74Probable FKBP-type peptidyl-prolyl cis-trans isome... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-A06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736019 ID=EY736019; Name=EY736019; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGGGCAAATGGACCGTTGATCATCAAATTTGCCCACAACAC
ACCACAATACAAGCAAAGCAAGCTGTTGTCTCAATACCCATTTCAAGAAG
AGCAGCAGCAATTCTGATATCTTCACTCCCATTTAGCGTCATTTCACTAC
CCAAATGCTCAGAAGCAAGAGAGAGACGCAACAAGAAAGCCATCCCACTT
GAAGACTATCATACTACTTCTGATGGGTTGAAATACTATGATATTGTTGA
GGGAAAAGGCCCAGTAGCTCAAAAAGGATCAACAGTTCAGGTGCACTTTG
ATTGTATTTTCCGGGGTATCACTGCTGTGTCAAGTCGAGAATCTAAACTT
TTAGCCGGAAATCGTAGCATTGCAGAGCCATATGAGTTCAAAGTTGGAGG
TCCTCCTGGTAAAGAACGAAAGCGTGAATTTGTAGACAACCCAAATGGTC
TTTTTTCTGCACAAGCTGCACCAAAACCCCCACCAGCAATGTACTCAGTA
ACAGAAGGGATGAAAGTAGGAGGCAAGAGGACTGTGATTGTTCCTCCAGA
GGCAGGTTATGATAAAAAAAGAATGAATGAGATACCGCCGGGAGCTACAT
TAGATTTGAAGCTGAATATTGAGCTTTTACAAGTAAAGCCCACCGAAGGA
NNAGTAAGCGTTGTCTGGATCACGGGTGTTTCATGGTGAATGAGATTTGA
NNNNTTCCATCGGGTCAAGGGAAATTGTATGGGTGCATNGCATATTATTC
ATTCTCAGTTCCCGTGGGAGTGGTTTACCCANAAGCCCCANCTTCATAGC
ACACCAAANAAAGGCCCCTC
back to top