EY736011

Overview
NameEY736011
Unique NameEY736011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12335 contig Csv1_Contig12335:1..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: EXOS8_HUMAN (Exosome complex exonuclease RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.239e-27
Identity = 58/168 (34.52%), Postives = 98/168 (58.33%), Query Frame = 3
Query:  147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDD 650
            F+ + PL Y+ R L E+ RPD R L   R TT+++G++++ADGSAL K+G+TT++  +K E   PS ++PD+G V  +  +PP+CS   R G P E A V ++ ++D I +S +I  ++L +  GK  W++Y D+ C                     +Q+P V++++
Sbjct:    5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE 172          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: EXOS8_MOUSE (Exosome complex exonuclease RRP43 OS=Mus musculus GN=Exosc8 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27
Identity = 57/168 (33.93%), Postives = 98/168 (58.33%), Query Frame = 3
Query:  147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDD 650
            F+ + PL Y+ R L E+ RPD R L   R TT+++G++++ADGSAL K+G+TT++  +K E   P +++PD G V  +  +PP+CS   R G P E A V ++ ++D + +S +I  ++L +  GK AW++Y D+ C                     +Q+P V++++
Sbjct:    5 FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE 172          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: EXOS8_BOVIN (Exosome complex exonuclease RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 58/168 (34.52%), Postives = 96/168 (57.14%), Query Frame = 3
Query:  147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDD 650
            F+ + PL Y+ R L E+ RPD R L   R TT+++G++ +ADGSAL K+G+TT++  IK E   P  ++PD+G V  +  + P+CS   R G P E A V ++ ++D I +S +I  ++L +  GK AW++Y D+ C                     +Q+P V++++
Sbjct:    5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINE 172          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: RRP43_SCHPO (Exosome complex component rrp43 OS=Schizosaccharomyces pombe GN=rrp43 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 47/137 (34.31%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYC 557
            F+++ P +Y    L + +R D R +S  R+  I+   +++A+GSA+ + G    +  IK E+  P   SP+EG +  +  + P+CS   +PG P++ A VV+++L  T+  S +INL+ L +   KAAW++Y DI C
Sbjct:   17 FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKKAAWVLYADIIC 153          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METTH (Probable exosome complex exonuclease 2 OS=Methanobacterium thermoautotrophicum GN=MTH_682 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.424e-15
Identity = 40/161 (24.84%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  201 RPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDDGQIIMLPEEQK 683
            R D R L   RD +I  G ++ A+GS+  K+G+T ++  +K ++  P  ++P+ G +  +  + P+ SP   PG P E +  +++ +   I  S MI+L++L ++ G   WM++ D++                       +IP   ++DG++++  E+ +
Sbjct:   25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQ 185          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METAC (Probable exosome complex exonuclease 2 OS=Methanosarcina acetivorans GN=MA_1776 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.400e-15
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 3
Query:  171 YFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIY 554
            Y    + +  R D R     RD  +    +  A+GSA   +G+T +L  +K++  TP  +S DEG +  +  + PI SP   PG P E A  +A+ +   I  SG I++K+L +  G++ W+V+ D++
Sbjct:   15 YIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVH 142          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METKA (Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri GN=MK0380 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/159 (25.79%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  201 RPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDDGQIIMLPEE 677
            R D R     R   +  G ++ A+GSAL ++G+T ++  +K+EV  P  +SP+EG ++++  + P+  P   PG P E A  +++ +   I  S MI+L+EL +  G+  W+ + DI+                       ++P   + D ++ ++ E+
Sbjct:   23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEED 181          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_PYRAE (Probable exosome complex exonuclease 2 OS=Pyrobaculum aerophilum GN=PAE2206 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14
Identity = 49/168 (29.17%), Postives = 83/168 (49.40%), Query Frame = 3
Query:  180 RHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDDGQIIMLPEEQK 683
            R LA   R D R   + R+  I++G V +ADGSA  K+G T ++A +K+ +  P  ++PDEG + ++  + P  SP    G P E A  +A+ +   I   G ++ K+L++ GGK A++++ D+Y                       Q+P V  D+  ++ L    K
Sbjct:   22 RLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGK-AYVLWIDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNK 188          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METMA (Probable exosome complex exonuclease 2 OS=Methanosarcina mazei GN=MM_2624 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14
Identity = 39/128 (30.47%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  171 YFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIY 554
            Y    + +  R D R     R+  +    ++ A+GSA   +G+T +L  +K++  TP  +S DEG +  +  + PI SP   PG P E A  +A+ +   I  SG I++K+L +  G++ W+V+ D++
Sbjct:   15 YIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVH 142          
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_AERPE (Probable exosome complex exonuclease 2 OS=Aeropyrum pernix GN=APE_1445 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14
Identity = 38/123 (30.89%), Postives = 69/123 (56.10%), Query Frame = 3
Query:  186 LAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIY 554
            L +  RP  R L   R+  I  G +  A+GSAL K+G T ++A +K  V  P  ++P++G +++     P+ SP+  PG P E A  +A+ +  ++   G ++L+ L +  G+  W+++ D+Y
Sbjct:   23 LRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWVDLY 145          
The following BLAST results are available for this feature:
BLAST of EY736011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
EXOS8_HUMAN1.239e-2734.52Exosome complex exonuclease RRP43 OS=Homo sapiens ... [more]
EXOS8_MOUSE2.114e-2733.93Exosome complex exonuclease RRP43 OS=Mus musculus ... [more]
EXOS8_BOVIN1.370e-2634.52Exosome complex exonuclease RRP43 OS=Bos taurus GN... [more]
RRP43_SCHPO1.327e-2134.31Exosome complex component rrp43 OS=Schizosaccharom... [more]
ECX2_METTH2.424e-1524.84Probable exosome complex exonuclease 2 OS=Methanob... [more]
ECX2_METAC5.400e-1531.25Probable exosome complex exonuclease 2 OS=Methanos... [more]
ECX2_METKA7.053e-1525.79Probable exosome complex exonuclease 2 OS=Methanop... [more]
ECX2_PYRAE1.571e-1429.17Probable exosome complex exonuclease 2 OS=Pyrobacu... [more]
ECX2_METMA1.571e-1430.47Probable exosome complex exonuclease 2 OS=Methanos... [more]
ECX2_AERPE1.571e-1430.89Probable exosome complex exonuclease 2 OS=Aeropyru... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-008-H08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736011 ID=EY736011; Name=EY736011; organism=Citrus sinensis; type=EST; length=802bp
CACGCGTCCGGCGACTTCTCTGACGCTCATACACTCTCTGCACAGTTAAA
GCTCCGACTCTTAGCTGCTGAAAAATAATTAAGTAAAAGAAAATGGGGTT
ACCAAATGCCTCAGAGGACTTGTCATCTGAGATGGAAGTAGACGCATTCC
GGCGCCTTTTCCCTCTCCGTTACTTCGAGCGTCATCTTGCAGAATCCATT
CGGCCCGATGCCAGGCCACTTTCTAGAGCTAGAGATACGACAATATCCAT
GGGTGCTGTTGCTTCCGCTGACGGGTCAGCGCTGGCAAAGATTGGTTCCA
CTACAATGTTGGCTGCTATTAAAATGGAAGTTATGACTCCTTCACTGGAG
TCGCCAGACGAGGGCTGCGTATCTATTGATTTCCACATGCCTCCAATTTG
TTCTCCACTTGTTAGGCCTGGTAGGCCAGCTGAGGCTGCACCAGTTGTAG
CGAAGCAGTTATCTGACACTATTTCAAGTTCTGGCATGATTAATTTGAAG
GAACTATCCTTGGTCGGTGGAAAAGCTGCCTGGATGGTGTATNTGGACAT
TTACTGCCTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTACTTTCAG
CAGTTGCTGCTGTCTCCTATTTGCAGATCCCCACAGTATCCTTGGATGAT
GGACAAATAATTATGCTGCCTGAGGAACAGAAGGGAAAAAATTCCGAAAA
AGAACGCGTCAATTACGAAAAAACGGCAGCCCCCCCTGTGTGGTTCTCGA
TGCTCATTGAAATGGCTACCGCCGGAGAACTGACAGCCGAGCGGATCCCC
TT
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