EY736011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: EXOS8_HUMAN (Exosome complex exonuclease RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.239e-27 Identity = 58/168 (34.52%), Postives = 98/168 (58.33%), Query Frame = 3 Query: 147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDD 650 F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K E PS ++PD+G V + +PP+CS R G P E A V ++ ++D I +S +I ++L + GK W++Y D+ C +Q+P V++++ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE 172
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: EXOS8_MOUSE (Exosome complex exonuclease RRP43 OS=Mus musculus GN=Exosc8 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27 Identity = 57/168 (33.93%), Postives = 98/168 (58.33%), Query Frame = 3 Query: 147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDD 650 F+ + PL Y+ R L E+ RPD R L R TT+++G++++ADGSAL K+G+TT++ +K E P +++PD G V + +PP+CS R G P E A V ++ ++D + +S +I ++L + GK AW++Y D+ C +Q+P V++++ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINE 172
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: EXOS8_BOVIN (Exosome complex exonuclease RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26 Identity = 58/168 (34.52%), Postives = 96/168 (57.14%), Query Frame = 3 Query: 147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDD 650 F+ + PL Y+ R L E+ RPD R L R TT+++G++ +ADGSAL K+G+TT++ IK E P ++PD+G V + + P+CS R G P E A V ++ ++D I +S +I ++L + GK AW++Y D+ C +Q+P V++++ Sbjct: 5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINE 172
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: RRP43_SCHPO (Exosome complex component rrp43 OS=Schizosaccharomyces pombe GN=rrp43 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21 Identity = 47/137 (34.31%), Postives = 81/137 (59.12%), Query Frame = 3 Query: 147 FRRLFPLRYFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYC 557 F+++ P +Y L + +R D R +S R+ I+ +++A+GSA+ + G + IK E+ P SP+EG + + + P+CS +PG P++ A VV+++L T+ S +INL+ L + KAAW++Y DI C Sbjct: 17 FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKKAAWVLYADIIC 153
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METTH (Probable exosome complex exonuclease 2 OS=Methanobacterium thermoautotrophicum GN=MTH_682 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.424e-15 Identity = 40/161 (24.84%), Postives = 82/161 (50.93%), Query Frame = 3 Query: 201 RPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDDGQIIMLPEEQK 683 R D R L RD +I G ++ A+GS+ K+G+T ++ +K ++ P ++P+ G + + + P+ SP PG P E + +++ + I S MI+L++L ++ G WM++ D++ +IP ++DG++++ E+ + Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQ 185
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METAC (Probable exosome complex exonuclease 2 OS=Methanosarcina acetivorans GN=MA_1776 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.400e-15 Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 3 Query: 171 YFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIY 554 Y + + R D R RD + + A+GSA +G+T +L +K++ TP +S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++ W+V+ D++ Sbjct: 15 YIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVH 142
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METKA (Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri GN=MK0380 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15 Identity = 41/159 (25.79%), Postives = 79/159 (49.69%), Query Frame = 3 Query: 201 RPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDDGQIIMLPEE 677 R D R R + G ++ A+GSAL ++G+T ++ +K+EV P +SP+EG ++++ + P+ P PG P E A +++ + I S MI+L+EL + G+ W+ + DI+ ++P + D ++ ++ E+ Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEED 181
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_PYRAE (Probable exosome complex exonuclease 2 OS=Pyrobaculum aerophilum GN=PAE2206 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14 Identity = 49/168 (29.17%), Postives = 83/168 (49.40%), Query Frame = 3 Query: 180 RHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIYCXXXXXXXXXXXXXXXXXXXXYLQIPTVSLDDGQIIMLPEEQK 683 R LA R D R + R+ I++G V +ADGSA K+G T ++A +K+ + P ++PDEG + ++ + P SP G P E A +A+ + I G ++ K+L++ GGK A++++ D+Y Q+P V D+ ++ L K Sbjct: 22 RLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGK-AYVLWIDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNK 188
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_METMA (Probable exosome complex exonuclease 2 OS=Methanosarcina mazei GN=MM_2624 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14 Identity = 39/128 (30.47%), Postives = 69/128 (53.91%), Query Frame = 3 Query: 171 YFERHLAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIY 554 Y + + R D R R+ + ++ A+GSA +G+T +L +K++ TP +S DEG + + + PI SP PG P E A +A+ + I SG I++K+L + G++ W+V+ D++ Sbjct: 15 YIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVH 142
BLAST of EY736011 vs. ExPASy Swiss-Prot
Match: ECX2_AERPE (Probable exosome complex exonuclease 2 OS=Aeropyrum pernix GN=APE_1445 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14 Identity = 38/123 (30.89%), Postives = 69/123 (56.10%), Query Frame = 3 Query: 186 LAESIRPDARPLSRARDTTISMGAVASADGSALAKIGSTTMLAAIKMEVMTPSLESPDEGCVSIDFHMPPICSPLVRPGRPAEAAPVVAKQLSDTISSSGMINLKELSLVGGKAAWMVYXDIY 554 L + RP R L R+ I G + A+GSAL K+G T ++A +K V P ++P++G +++ P+ SP+ PG P E A +A+ + ++ G ++L+ L + G+ W+++ D+Y Sbjct: 23 LRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWVDLY 145 The following BLAST results are available for this feature:
BLAST of EY736011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >EY736011 ID=EY736011; Name=EY736011; organism=Citrus sinensis; type=EST; length=802bpback to top |