EY735888

Overview
NameEY735888
Unique NameEY735888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7080 contig Csv1_Contig7080:1433..1960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    4 ASAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAK 231
            + AV+VPR PGT SEEDDGYLIFF HDE TGKS V+VIDAK MSA+PVAVVELP RVPYGFHAFFV+E+QL+EQAK
Sbjct:  465 SEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAK 540          
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.963e-29
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 1
Query:    4 ASAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL 234
            + AV++PR PG  SEEDDGYL+ F HDE  GKS V+VIDAKTMSADPVAVVELP+RVPYGFHAFFV+EEQL+EQAKL
Sbjct:  467 SEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQEQAKL 543          
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.153e-28
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    4 ASAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 225
            + AVFVPRE G  SEEDDGYLIFF HDE TGKS VNVIDAKTMSA+PVAVVELP+RVPYGFHAFFV+EEQL+ Q
Sbjct:  469 SEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAFFVNEEQLQWQ 542          
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.140e-26
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    4 ASAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 225
            + A++VPRE   ++EEDDGYLIFF HDE TGKS V VIDAKTMSA+PVAVVELPHRVPYGFHA FV+EEQL+EQ
Sbjct:  465 SEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQEQ 535          
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.142e-14
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   16 FVPREPGT-SSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEE 222
            FV R+PG   +EEDDGY++ + HDE TG+S   V+DAK+   + VA V LP RVPYGFH  FV E  L +
Sbjct:  525 FVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNK 594          
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.184e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   31 PGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 225
            PG   EED+GY++ F HDEKT KS + +++A ++  +  A V+LP RVPYGFH  F+  + L +Q
Sbjct:  535 PGEGGEEDEGYILCFVHDEKTWKSELQIVNAVSLEVE--ATVKLPSRVPYGFHGTFIGADDLAKQ 597          
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   16 FVPREPGTSS-EEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 225
            FVP     S  EEDDGY++ + HDE  G+SS  V+DA++   + +A V LP RVPYGFH  FV+E +L  Q
Sbjct:  298 FVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGFHGLFVTEAELLSQ 368          
BLAST of EY735888 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.356e-11
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   16 FVPREPGTSSE--EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 228
            FVP +P  +    EDDGY++ F HDE+ G S + V++A  M  +  A V+LP RVP+GFH  F++ ++LE QA
Sbjct:  533 FVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 603          
The following BLAST results are available for this feature:
BLAST of EY735888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCD1_PEA3.034e-2980.26Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU3.963e-2977.92Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA1.153e-2882.43Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_ARATH3.140e-2677.03Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH6.142e-1452.86Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED3_ARATH2.184e-1146.159-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
ZCD_CROSA2.853e-1149.30Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED1_MAIZE6.356e-1145.219-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-D02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735888 ID=EY735888; Name=EY735888; organism=Citrus sinensis; type=EST; length=531bp
CACGCGTCCGCTGTTTTTGTTCCTAGAGAGCCTGGTACCTCTTCTGAAGA
AGATGATGGATACTTAATATTCTTCTCTCATGATGAGAAAACCGGAAAGT
CATCAGTGAACGTGATTGATGCAAAAACAATGTCAGCTGATCCTGTTGCA
GTTGTCGAATTACCACATAGGGTTCCATACGGATTTCATGCCTTCTTTGT
GTCAGAGGAACAACTTGAAGAGCAAGCAAAATTGTGATCGTGGGCAGAGA
CCTTGTGACAAGTGAAAGCAGAGCGATAAATAGAATAAATCTATAATCTC
TTCCGCGAGCTGCGTTGGGTTTGTGGGTTATGTCATTATGTAGAGCATGA
GAACTCTGATGTAATAAGAAAAATATATTTGAGTTTTGTAATTAATTTTA
CCGCCAAGTTATCTCACCCCAAGAAGTTATTTTATCTGTTTTTAAGCTTA
ATTTCCGATTGGCTAAAACGGATGTACTTATTTAATTGGATTTTCAATAA
TTATTTGTATTTTGATAANAAAAAAAAAAAA
back to top