EY735867

Overview
NameEY735867
Unique NameEY735867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2587 contig Csv1_Contig2587:5..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYNC1_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.863e-79
Identity = 141/211 (66.82%), Postives = 172/211 (81.52%), Query Frame = 1
Query:  109 MADNELP-VDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP--EGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQ 726
            MAD  +P   Q+A + L +D   VQR QFS+RVLI++IL RPDGGAGLAG+ VR+GGWVK+GR+QGK +F+FL VNDGSCPANLQV+VD  + D+  LV TGTCV V+G+LK PP  +GT+Q+IEL V KV+DVG VD +KYP+P TKLTLE L+D +  R RTN+I+AVARIRNALA+ATH+F Q+  FLYIHTPIITTSDCEGAGEMFQ
Sbjct:    1 MADEIVPPATQLAAVSLENDGSTVQRAQFSNRVLIRTILDRPDGGAGLAGQTVRIGGWVKSGRDQGKRTFSFLAVNDGSCPANLQVMVDPSLYDVSNLVATGTCVTVDGVLKVPPKGKGTQQQIELNVVKVIDVGTVDASKYPLPKTKLTLETLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQ 211          

HSP 2 Score: 41.9726 bits (97), Expect = 1.863e-79
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3
Query:  729 TTLISDADKLEKGLNQNPPPSKPDIKTASLGFKEKGEAGAKIKSDKA 869
            TTLI+  ++LE+ L  NPPP++ D++ A L   E+G   A++K+ KA
Sbjct:  213 TTLINYTERLEQDLIDNPPPTEADVEAARLIVIERGNVVAELKAAKA 259          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYNC3_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 3.170e-79
Identity = 139/205 (67.80%), Postives = 165/205 (80.49%), Query Frame = 1
Query:  127 PVDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGT--KQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            P +Q+A  +L +D   VQ+ QFSDRVLI+SIL    GGA LAG++VR+GGWVKTGR+QGKG+FAFLEVNDGSCPANLQV+VD  + DL +LV TGTCV V+G+LK PPEG   KQ IEL V+ V+ VG VDP  YP+P TKLT EFL+D +  R RTN I+AVARIRNALA+ATH+F Q+  FLYIHTPIITTSDCEGAGEMFQ+
Sbjct:    8 PANQLAADNLENDGSTVQKAQFSDRVLIRSIL---GGGAKLAGQKVRIGGWVKTGRQQGKGTFAFLEVNDGSCPANLQVMVDSSLYDLSRLVATGTCVTVDGVLKIPPEGKGLKQSIELSVETVIAVGTVDPTTYPLPKTKLTPEFLRDVLHLRSRTNLISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQV 209          

HSP 2 Score: 48.1358 bits (113), Expect = 3.170e-79
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 3
Query:  726 ITTLISDADKLEKGLNQNPPPSKPDIKTASLGFKEKGEAGAKIKSDKA 869
            +TTLI+  +++E+ L  NPPP++ D++ A L  KE+GEA A++K  KA
Sbjct:  209 VTTLINHTERVEQDLIDNPPPTEADVEAARLIVKERGEAVAQLKVAKA 256          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYN_SYNFM (Asparaginyl-tRNA synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=asnS PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.991e-37
Identity = 82/164 (50.00%), Postives = 106/164 (64.63%), Query Frame = 1
Query:  247 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL---VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            G+ VR  GWV+T R+  K   +F+E+NDGSC  NLQV+ D+   +  QL   + TG  V VEG +   P G  Q IEL+  ++   G  DPA YP+   + + EFL+     RPRTNTI AV+R+RN L+YA H F Q +GF YIHTPIIT SDCEGAGEMF++
Sbjct:   19 GKTVRAQGWVRTKRDS-KAGVSFIELNDGSCLRNLQVVADQGHPEYRQLLESITTGCAVMVEGSIAYSP-GKGQTIELKADRITLYGTADPAVYPLQKKRHSFEFLRQIGHLRPRTNTIGAVSRVRNRLSYAIHQFFQDRGFYYIHTPIITASDCEGAGEMFRV 180          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYNO_ARATH (Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.991e-37
Identity = 82/185 (44.32%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  181 QFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL----VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMF 723
            +F  ++ I  +    D G    G+ + + GWV+T R Q   S  F+E+NDGSC +NLQ ++  D     Q+    + TG  V V+G +    +GTKQK+EL+V+K++ VG  D + YPI   +++ EFL+ +   RPRTNT  AVAR+RN LAYATH F Q+ GF+++ +PIIT SDCEGAGE F
Sbjct:   87 EFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQS--SVTFIEINDGSCLSNLQCVMTSDAEGYDQVESGSILTGASVSVQGTIV-ASQGTKQKVELKVEKIIVVGECD-SSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCEGAGEQF 267          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYN_DESPS (Asparaginyl-tRNA synthetase OS=Desulfotalea psychrophila GN=asnS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.600e-37
Identity = 82/161 (50.93%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  256 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP---TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            V V GW++T R+ G   F+FLEVNDGS   N+QVI DK + +  + V    TG  V VEG+LK  P    Q +E+    V  VG  DP  YP+   + +LEFL++    RPRTN I+AVAR+R+ L+YA H F Q++GF  +HTPIITTSDCEGAGEMFQ+
Sbjct:   18 VTVAGWIRTRRDTG--DFSFLEVNDGSTLINMQVIADKSLGNYEEEVKKLSTGCSVMVEGVLKESP-AKGQSVEVHASSVTVVGWADPETYPLQKKRHSLEFLREISHLRPRTNAISAVARVRSRLSYAVHNFFQEKGFTQVHTPIITTSDCEGAGEMFQV 175          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYN_PARUW (Asparaginyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.793e-37
Identity = 84/182 (46.15%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  193 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            R  IKS+         L G  + + GWV+T R Q   +F F+E+NDGS  +N Q+I   D+A   QL+    TG  V   G +   P G +Q +E++   +  +G  DP  Y +   + T EFL+     RPRTNTI AV R+RNALA+ATH F QK+GFLYIHTPIIT SDCEGAG+MFQ+
Sbjct:    2 RTKIKSLRGTTPEVRALIGHDITLKGWVRTVRNQK--TFTFIEINDGSTLSNFQIIATPDIAGYDQLINQLSTGVSVSAIGTIVESP-GKEQNLEMQATAITIIGKCDPEVYLLQKKRHTFEFLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQV 180          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYN_SYNY3 (Asparaginyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=asnS PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.179e-35
Identity = 81/167 (48.50%), Postives = 109/167 (65.27%), Query Frame = 1
Query:  238 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP---TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            G A  QV V GW++T R      F+F+EVNDGS  ANLQV++D  +AD  +L+    TG  + VEG L  P  G  Q++EL+  K+  +G  DP  YP+   + + EFL+     RPRTNTI AV R+RNA A A H F Q++GFL++HTPIIT SDCEGAG++F++
Sbjct:   13 GQADDQVMVQGWLRTKRTLK--DFSFVEVNDGSSLANLQVVLDGSLADYDRLLSQLQTGAALVVEGKLA-PSPGKGQRVELKATKLELLGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKV 176          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYN_GEOSL (Asparaginyl-tRNA synthetase OS=Geobacter sulfurreducens GN=asnS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.829e-34
Identity = 85/183 (46.45%), Postives = 116/183 (63.39%), Query Frame = 1
Query:  187 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            ++R+ I+ IL         AG +V V GWV+T R  GKG  AFL VNDGSC A+LQV+ +  +A+  +L  + TG  V V G++   P    Q +EL   KVV VG  D  +YP+   + T E+L+     RPR+NT  AV R+R++LA A H F  ++GFLY+HTPIITTSDCEGAGE+F++
Sbjct:    2 NERIRIREILAGTP-----AGTEVIVKGWVRTSRV-GKG-VAFLAVNDGSCLASLQVVAEPGLANYHELRGIGTGAAVAVRGIVAESP-AAGQAVELHATKVVVVGGADE-QYPLQKKRHTFEYLRTIAHLRPRSNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRV 175          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYN_TREDE (Asparaginyl-tRNA synthetase OS=Treponema denticola GN=asnS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.656e-33
Identity = 82/183 (44.81%), Postives = 107/183 (58.47%), Query Frame = 1
Query:  199 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            LIK ILT         G+ + V GWV+T RE    +  F+E+NDGSC A++Q   D+D         L +   TG  V V G L  P     Q++EL+   +   G  D  KYP+   + ++EFL+D    R RTNT  AVARIR+ +AYA HTF Q++GF Y+HTPIIT SDCEGAGEMF +
Sbjct:    4 LIKDILTSEP-----KGQAIDVYGWVRTKRETK--NLVFIEINDGSCFASIQATFDRDTGLDNNTEALLKKAGTGVSVKVSGNLV-PSPAAGQRVELQANNIHIFGDADQEKYPLQKKRHSMEFLRDIAHLRARTNTFGAVARIRSQMAYAIHTFFQERGFQYVHTPIITGSDCEGAGEMFHV 178          
BLAST of EY735867 vs. ExPASy Swiss-Prot
Match: SYN_AZOPC (Asparaginyl-tRNA synthetase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=asnS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.519e-32
Identity = 77/183 (42.08%), Postives = 111/183 (60.66%), Query Frame = 1
Query:  193 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQ----LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPXTKLTLEFLKDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQL 729
            R  I  +L+ PD       R+V V GWV+T R  G  + +F+E+NDGS    +Q++V+  V  LG+     + TG C+ + G+L    +G  QK+E++  ++   G+ DP+ YP+     +LEFL++    RPRTNT   + RIR+ LAYA H +  KQGF Y HTPIIT+SD EGAG MFQ+
Sbjct:    5 RARIVDLLSTPD-----FNRKVCVKGWVRTRR--GNKNISFIELNDGSTVHGIQIVVN--VVKLGEDSLKSITTGACIAINGLLVKS-KGEGQKVEIQADEIEIYGIADPSVYPLQKKWHSLEFLREIAYLRPRTNTFGCILRIRHHLAYAIHKYFNKQGFFYFHTPIITSSDAEGAGSMFQI 177          
The following BLAST results are available for this feature:
BLAST of EY735867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
SYNC1_ARATH1.863e-7966.82Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arab... [more]
SYNC3_ARATH3.170e-7967.80Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arab... [more]
SYN_SYNFM1.991e-3750.00Asparaginyl-tRNA synthetase OS=Syntrophobacter fum... [more]
SYNO_ARATH1.991e-3744.32Asparaginyl-tRNA synthetase, chloroplastic/mitocho... [more]
SYN_DESPS2.600e-3750.93Asparaginyl-tRNA synthetase OS=Desulfotalea psychr... [more]
SYN_PARUW5.793e-3746.15Asparaginyl-tRNA synthetase OS=Protochlamydia amoe... [more]
SYN_SYNY33.179e-3548.50Asparaginyl-tRNA synthetase OS=Synechocystis sp. (... [more]
SYN_GEOSL7.829e-3446.45Asparaginyl-tRNA synthetase OS=Geobacter sulfurred... [more]
SYN_TREDE8.656e-3344.81Asparaginyl-tRNA synthetase OS=Treponema denticola... [more]
SYN_AZOPC2.519e-3242.08Asparaginyl-tRNA synthetase OS=Azobacteroides pseu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-B04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735867 ID=EY735867; Name=EY735867; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGCAATCCCTGCGAACCAGCAGCCACTCAGAATCTTGCTGC
TGCTCACAAACTTGCCATTGCTCACGATATATCTCTCAGGTGCACTGTCT
CCCCACCAATGGCAGATAACGAGCTGCCAGTCGACCAAGTTGCAACCATG
GATTTAAATGATGATGCGGTGCAAAGACACCAATTCTCAGACCGTGTTCT
GATCAAGTCTATTTTGACTCGACCTGATGGTGGCGCTGGGCTAGCTGGGC
GGCAAGTGCGAGTTGGAGGATGGGTGAAAACAGGTCGTGAGCAAGGGAAA
GGCTCTTTTGCTTTTCTGGAGGTGAATGATGGGTCATGCCCTGCTAATTT
GCAGGTTATTGTGGACAAGGATGTAGCAGATTTAGGCCAGCTGGTGCCAA
CTGGCACTTGTGTTTATGTTGAGGGGATGCTTAAAAACCCTCCTGAGGGG
ACTAAACAGAAGATTGAGCTTCGGGTTCAGAAAGTGGTCGATGTGGGTAT
GGTTGACCCTGCTAAGTACCCTATCCCCNAGACAAAGCTCACTCTTGAGT
TTTTGAAGGATCGTATTCCTTTTCGGCCCAGGACAAACACGATAGCTGCG
GTTGCACGAATTCGAAATGCACTTGCTTATGCCACTCATACATTCCTTCA
GAAGCAAGGGTTTCTCTACATTCACACTCCAATTATCACCACCAGTGATT
GTGAGGGTGCTGGTGAGATGTTTCAATTACAACTCTAATAAGTGATGCTG
ACAAGTTGGAAAAGGGACTGAATCAGAATCCTCCTCCATCAAAACCTGAC
ATAAAAACTGCCAGCCTTGGTTTCAAGGAGAAAGGAGAAGCTGGTGCAAA
AATAAAATCTGATAAAGCCGGGGGG
back to top