EY735860

Overview
NameEY735860
Unique NameEY735860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12320 contig Csv1_Contig12320:1..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735860 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-56
Identity = 84/112 (75.00%), Postives = 96/112 (85.71%), Query Frame = 1
Query:  502 QTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTXRALARIIEGKLLRK*RDI-HL-QMISGGREVEPL 831
            Q G+GSSKNYAISLPQRVNPA+  L+ DYCRFHQVPGRSNKERK++DEKFIRMDTK+LCELTSAADSLQLKPLVDLT RALARIIEGK   + R+I HL   ++   ++EPL
Sbjct:   47 QKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL 158          

HSP 2 Score: 78.9518 bits (193), Expect = 2.235e-56
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  368 MSEGAMAVVKPEM-KSYIWVQTTDGSIQQVEEEVAMFCPMICREIFKQ 508
            MSEG MA++KPEM KSYIW++T DGSIQQVE+EVAMFCPMIC+E+ ++
Sbjct:    1 MSEGEMAIIKPEMMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQK 48          
BLAST of EY735860 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.430e-55
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 1
Query:  502 QTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTXRALARIIEGKLLRK*RDI-HL-QMISGGREVEPL 831
            Q G+GSSKN+AISLPQRVNPA+F L+LDYCRFHQ+PGRSNKERK +DE+FIRMDTK+LCELTSAADSLQLKPLVDLT RALARIIEGK   + R+I HL   ++   ++EPL
Sbjct:   47 QKGVGSSKNHAISLPQRVNPAMFSLILDYCRFHQLPGRSNKERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLEPL 158          

HSP 2 Score: 78.1814 bits (191), Expect = 1.430e-55
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  368 MSEGAMAVVKPE-MKSYIWVQTTDGSIQQVEEEVAMFCPMICREIFKQ 508
            MSEG +AV+KPE MKSYIW+QT DGSIQQVE+EVAMFCPMIC+E+ ++
Sbjct:    1 MSEGDLAVMKPETMKSYIWLQTADGSIQQVEQEVAMFCPMICQEVIQK 48          
The following BLAST results are available for this feature:
BLAST of EY735860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASK21_ARATH2.235e-5675.00SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH1.430e-5574.11SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735860 ID=EY735860; Name=EY735860; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGGAAAAAACACAGCGTCACAGCGATTAGAGAAACCCTAGC
GCCAGCTCCCCGTCCCGTTTTCGCAGACTCCACTTTTATCTGGAAAAAAA
TTGTCTTCGTTTAAGCTTCGGCGAGTGACAACTGAAAAGACTGAGGAAGT
TTTCCTGACAAGAATGCCCTTACACATGTTATTGGAATCCAGCATTGAGT
CAGTTTGGGAAGTGTTGATGAAGAGTTTCTGTCCTCGTAACGAAGATAAT
CTTCTGAAGAACAAGAAGCCTTCTTTTCCTCTGTTACTTTTTTGCTATTG
AAATAGAGGTGCAAGTTCTTTTCACTCTCTAGGAGCTACGTAAAGTTTTT
TGCTGCGTCCTCTTTAAATGTCCGAAGGTGCAATGGCAGTAGTCAAACCT
GAGATGAAGTCTTATATCTGGGTCCAAACTACTGATGGTTCAATCCAGCA
AGTAGAAGAGGAGGTTGCCATGTTTTGTCCCATGATTTGCCGAGAGATTT
TCAAACAGGAATGGGATCTTCCAAAAACTATGCTATATCACTTCCACAAA
GGGTCAATCCTGCTATTTTTGGATTGGTACTTGATTACTGCCGGTTTCAT
CAAGTACCAGGCCGCTCAAATAAGGAACGTAAAATGTTTGATGAGAAGTT
TATCCGTATGGATACTAAAAAGTTGTGTGAGCTTACTTCTGCTGCTGACA
GCCTCCAATTAAAGCCTTTGGTGGATCTCACTANTCGTGCGCTTGCTCGA
ATTATTGAAGGAAAACTCCTGAGGAAATAGCGAGACATTCATTTACAGAT
GATCTCCGGAGGAAGAGAAGTGGAACCCCTTAATATGGTACTGATGACCG
CGTATTCGGCTTTGGATCGATATATG
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