EY735850

Overview
NameEY735850
Unique NameEY735850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9337 contig Csv1_Contig9337:643..1490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735850 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 73/223 (32.74%), Postives = 103/223 (46.19%), Query Frame = 3
Query:  111 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNXXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPXECLLLKNMFDPKNETYQEFDMDIKEDVEGEC 776
            RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG  KG+GF+ F+  E A+ AL      E+ GR +KV  VT+++      A++           + L    R  LM +L          G  + PA                   V+ L   L Q T         +AL    +  P+        +C  L NMF+P+ E    +D +IK+DV  EC
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDAS--SASSFLDSDELERTGIDLGTTGRLQLMARLAEG------TGLQIPPAAQ----QALQMSGSLAFGAVADLQTRLSQQTE-------ASALAAAASVQPL------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC 448          
BLAST of EY735850 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.035e-19
Identity = 72/224 (32.14%), Postives = 103/224 (45.98%), Query Frame = 3
Query:  111 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNXXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQV-PTASVPIFDTIGVPXECLLLKNMFDPKNETYQEFDMDIKEDVEGEC 776
            RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG  KG+GF+ F+  E A+ AL      E+ GR +KV  VT+++      A++           + L    R  LM +L          G  + PA                    S ++    + +  T    L  A  V P A+           +C  L NMF+P+ E    +D +IK+DV  EC
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDAS--SASSFLDSDELERTGIDLGTTGRLQLMARLAEG------TGLQIPPAAQ-QALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLAT-----------QCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC 454          
BLAST of EY735850 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.035e-19
Identity = 72/224 (32.14%), Postives = 103/224 (45.98%), Query Frame = 3
Query:  111 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNXXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQV-PTASVPIFDTIGVPXECLLLKNMFDPKNETYQEFDMDIKEDVEGEC 776
            RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG  KG+GF+ F+  E A+ AL      E+ GR +KV  VT+++      A++           + L    R  LM +L          G  + PA                    S ++    + +  T    L  A  V P A+           +C  L NMF+P+ E    +D +IK+DV  EC
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDAS--SASSFLDSDELERTGIDLGTTGRLQLMARLAEG------TGLQIPPAAQ-QALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLAT-----------QCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC 454          
BLAST of EY735850 vs. ExPASy Swiss-Prot
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 59/223 (26.46%), Postives = 95/223 (42.60%), Query Frame = 3
Query:  111 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNXXXXXXXXXXXXXXXXXVSTLVPPLVQG-TVPTHPGQLGTALQVPTASVPIFDTIGVPXECLLLKNMFDPKNETYQEFDMDIKEDVEGEC 776
            RL V N+HFN+T++ ++ +FEPFG +E V L  D+    KGFG++Q+     ARNAL      ++ GR ++V    D+         TT          L+   RS     Q   R+G ++T        A                      L+  L +   +  +  +L +  + P  S            C LL+NMF+P  ET   +  ++++DV+ EC
Sbjct:  341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK-----FTTETTSSMLKRFDETLARQERS-----QPSQRNGGSSTYESQDYREAAPLSPTEEESRPITR-----DELMKKLARSEDISDNSSKLVSEPEPPIRS-----------RCALLENMFNPAEETSPNWVQELEQDVKEEC 537          
BLAST of EY735850 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  111 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 344
            RLYVG+LHFN+TED LR +FEPFG ++ + L  D +TG  KG+GF+ F+  E AR AL      E+ GR ++V  VT++
Sbjct:  264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342          
The following BLAST results are available for this feature:
BLAST of EY735850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBM39_PONAB6.067e-2032.74RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE1.035e-1932.14RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN1.035e-1932.14RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RSD1_SCHPO3.809e-1426.46RNA-binding protein rsd1 OS=Schizosaccharomyces po... [more]
RBM23_HUMAN3.809e-1449.37Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-H07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735850 ID=EY735850; Name=EY735850; organism=Citrus sinensis; type=EST; length=847bp
CCACGCGTCCGGGTTAACCTTCAGAAGCTGAAAAGAATCTTGTTCAGTCT
AATTCATCCATTGCTGGAGCATCAGGTGGAGGCACTGGTCCCTATTCAGG
TGGAGCCAGAAGGCTGTATGTTGGCAATCTCCATTTTAACATGACAGAAG
ATCAACTTCGTCAAGTTTTTGAACCGTTTGGTACTGTGGAGCTTGTGCAA
CTCCCGCTTGATGAAACAGGGCATTGTAAAGGTTTTGGTTTTGTCCAGTT
TGCACGCCTTGAAGATGCAAGGAATGCTTTGAATTTGAATGGTCAACTGG
AGATTGTTGGCCGGGCAATTAAGGTGTCAGCTGTTACTGATCAAAGCGGA
TTGCAAGATCTTGGGGCTAATACTACTGGGGATTTTGATGATGACGAAGG
TGGTGGTCTGTCTCTGAATGCGCGTTCTCGAGCACTTCTTATGCAGAAAT
TGGATCGTAGTGGCAGTGCTACAACTATTGCTGGTTCTGCAGTCACGCCT
GCAGTCAACAGTACTGCTCTTCCTTTACCAACGGCACCACTTCTTGGAGC
TGCCTCTGCTGTTTCTACCCTTGTTCCTCCTCTTGTGCAAGGTACTGTTC
CTACTCATCCTGGACAACTCGGCACTGCTCTTCAAGTTCCCACTGCTAGC
GTTCCCATCTTTGATACAATCGGTGTCCCTANTGAATGTCTATTGTTGAA
AAATATGTTTGATCCAAAAAATGAGACATACCAAGAGTTCGATATGGATA
TCAAAGAAGATGTTGAAGGCGAATGTCCGAAGTTCGAAAAATTGAAACTA
TTTTTGTTGAAAAAGATAACGCTGGATTTGTGTCCTTGCAATGTGAA
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