EY735760

Overview
NameEY735760
Unique NameEY735760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735760_ssr177 microsatellite EY735760_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
EY735760_ssr90 microsatellite EY735760_ssr90:90..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY735760 vs. ExPASy Swiss-Prot
Match: LONH1_SPIOL (Lon protease homolog 1, mitochondrial OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:  325 ESVELPNRLGILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQTEEKGSIGILPVRDAPADRSV 519
            E+VELP+RLGIL FRNKVLLPGAIIRIRCTSPSSVKLVEQELWQ EEKG IGI+PVRDA    SV
Sbjct:    3 EAVELPSRLGILAFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGIVPVRDASESASV 67
[Close]
BLAST of EY735760 vs. ExPASy Swiss-Prot
Match: LONH1_MAIZE (Lon protease homolog 1, mitochondrial OS=Zea mays GN=LON1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:  319 STESVELPNRLGILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQTEEKGSIGILPVRDAPA 507
            S   VELP+RL +LPFRNKVLLPGAI+RIRCT+PSSVKLVEQELWQ EEKG IG+LPVRD+ A
Sbjct:    2 SDSPVELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEA 64
[Close]
BLAST of EY735760 vs. ExPASy Swiss-Prot
Match: LONH1_ARATH (Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana GN=LON PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.507e-21
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  325 ESVELPNRLGILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQTEEKGSIGILPVRDAPADRSV 519
            E+VELP+RL ILPFRNKVLLPGAIIRIRCTS SSV LVEQELWQ EEKG IGILPVRD     S+
Sbjct:    3 ETVELPSRLAILPFRNKVLLPGAIIRIRCTSHSSVTLVEQELWQKEEKGLIGILPVRDDAEGSSI 67
The following BLAST results are available for this feature:
BLAST of EY735760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LONH1_SPIOL3.687e-2384.62Lon protease homolog 1, mitochondrial OS=Spinacia ... [more]
LONH1_MAIZE5.324e-2279.37Lon protease homolog 1, mitochondrial OS=Zea mays ... [more]
LONH1_ARATH4.507e-2180.00Lon protease homolog 1, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-G01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735760 ID=EY735760; Name=EY735760; organism=Citrus sinensis; type=EST; length=879bp
CCACGCGTCCGCCCACGCGTCCGAGCGCGGTAGCGAAATCGGAGAAGGGA
GAGAATTCGGACACCGGCTTTTGAGTTCTGACTTAGTCCAACCAAACCAA
ACCAAACCAAATTCGCCTACCAACAAACAAGCCTTCTCCCCATCGCTGAC
TCTTTGATTCTTGTTTTACTTTTCGTCTCCTCCTCCTCTTTATGTAATTA
TCAAAAGAAATTCTTTTTTTTAGAAAAAAAAAAGTAAGTTGATTTCACCT
CTATAAGACAAACGACACTTGCTGTCTTTGAAGTTCTGTTTTCACTCCGT
GTACCGAGTTGCTGCAAATCGACGGAATCGGTCGAGTTACCGAATCGCCT
CGGAATTCTTCCGTTCAGGAACAAAGTTCTATTACCTGGCGCCATTATTC
GAATTCGCTGCACTTCACCTAGCAGTGTGAAATTGGTGGAGCAGGAGCTG
TGGCAGACAGAAGAGAAGGGATCGATTGGAATCCTGCCTGTTAGAGATGC
CCCTGCGGACAGGTCAGTGGGCCCCCATGGTTCCCCAGGGTGGGGGGGAG
GCGATTGCAGGGAAGGGGGCTCCGGGGGGGGAGGTGGGGGGTTCGGATGG
CGACAATCACGGAGGGAGGAGGCGCGGGGCGGGGGGGGGGGGGGGGCGGC
CCGGGGGGCGGGGGCCCGCCCCCGGGGGCGGCACACGCCCCTGGGGGGGT
CCTCGCGGCGGGGGCCGCGCGCCGCGGGCGCGGGGCGGTCCGGTGGCCGC
GAGGGCGGGCGGCGGGGCGGGGGCTCCCCCCCAGAGTAAGAAGGCGAACG
AGANAATCAACTCAACGGATAAATCCGCCTTTCCATCGCCTGCACACCCT
AGACCCCCGCACTCGCGGAGGGGCAGGCC
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