EY735759

Overview
NameEY735759
Unique NameEY735759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735759_ssr62 microsatellite EY735759_ssr62:62..73. BLAST: Citrus ESTs to Prunus persica proteins V1
EY735759_ssr95 microsatellite EY735759_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2281 contig Csv1_Contig2281:88..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.149e-25
Identity = 71/186 (38.17%), Postives = 101/186 (54.30%), Query Frame = 3
Query:  303 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVP-----EVSAAVAEFKGPDVFGVVRLAQVNMELAXIEANFSGLSPGEHGWSINEFGDLTKGALSTGQSYNP--KIEGNAKEP---LGDLRTVVADEIGEGLLSRVTKILRVSDLMGRA 830
            + E+ V M C+ CVDAV + LQ V G+++VEV L NQ+V +  + P + +   LE TGR+A L G G       E + A+    GP V GVVR  Q+  E   IE    GL PG HG  +++FGDLT+   S G  +NP     G  ++     GDL  V AD  G  +     ++L+V D++GR+
Sbjct:   13 MLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQAVLKGMGSGRWQNLEAAVAILGGSGP-VQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVWDVIGRS 197          
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.665e-25
Identity = 73/183 (39.89%), Postives = 101/183 (55.19%), Query Frame = 3
Query:  309 EYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQG---VPEVSAAVAEFKGP-DVFGVVRLAQVNMELAXIEANFSGLSPGEHGWSINEFGDLTKGALSTGQSYNP--KIEGNAKEP---LGDLRTVVADEIGEGLLSRVTKILRVSDLMGRA 830
            E+ V M C+ CVDAV + L+   GV+NVEV L NQ+V +  + P + +   LE TGR+A L G G   +  + AAVA  +G   V GVVR  Q++ EL  IE    GL PG HG  ++++GDLTK   S G  +NP     G  ++     GDL  V A+  G        K L+V D++GR+
Sbjct:   15 EFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLKNLGAAVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVWDVIGRS 197          
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.819e-24
Identity = 71/183 (38.80%), Postives = 102/183 (55.74%), Query Frame = 3
Query:  309 EYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQG---VPEVSAAVAEFKG-PDVFGVVRLAQVNMELAXIEANFSGLSPGEHGWSINEFGDLTKGALSTGQSYNP--KIEGNAKEP---LGDLRTVVADEIGEGLLSRVTKILRVSDLMGRA 830
            E+ V M C+ CVDAV + L+ V GV+NV+V L NQ+V +  + P + +   LE TGR+A L G G   +  + AAVA  +G   + GVVR  Q++ EL  IE    GL PG HG  ++++GDLT+   S G  +NP     G  ++     GDL  V A+  G        K L+V D++GR+
Sbjct:   15 EFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLQNLGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVWDVIGRS 197          
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.819e-24
Identity = 75/193 (38.86%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  279 GDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQG---VPEVSAAVAEFKGP-DVFGVVRLAQVNMELAXIEANFSGLSPGEHGWSINEFGDLTKGALSTGQSYNPKIEG-----NAKEPLGDLRTVVADEIGEGLLSRVTKILRVSDLMGRA 830
            G+QG    L E+ V M C+ CVDAV++ LQ V GV++VEV L +Q+V +  + P + +   LE TGR+A L G G   +  + AAVA   GP  V GVVR  Q+  E   IE    GL PG HG  ++++GDLT    S G  +NP         ++    GDL  V AD  G  +     + L+V D++GR+
Sbjct:    6 GNQGTLCTL-EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRS 197          
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS1_DEBHA (Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii GN=CCS1 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 57/189 (30.16%), Postives = 97/189 (51.32%), Query Frame = 3
Query:  312 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEVSAAVAEFKGPD-------VFGVVRLAQVNMELAXIEANFSGLSPGEHGWSINEFGDLTKGALSTGQSYNPKIEGNAKEPLGDLRTV-----VADEIGEGLL----SRVTKILRVSDLMGRA 830
            + V M+C+ CVD+V   L+++ G+   ++DL + +V   GS P   + +A++ TG+ A + G G P  SAAV   +  D       V G+ R+  V      ++   +GL  G +  SI + G+L+KGALSTG+ + P       +P+ +  T+      +  + EG L      +   L +SDL+GR+
Sbjct:    9 FAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDAIIRGTGAPN-SAAVCILESFDPKDIQQPVKGLARIVSVGANDLVVDLTVNGLPQGVYYPSIRKSGNLSKGALSTGECFYPLGPLEVDQPVSESTTINSLGAASPTVEEGSLYAGQGFLHADLNISDLIGRS 196          
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS1_ASHGO (Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii GN=CCS1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  312 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEVSAAVAEFK-----GPDVFGVVRLAQVNMELAXIEANFSGL-SPGEHGWSINEFGDLTKGALSTGQSYN 701
            Y V M C  C   + + L+ V GV+ V  DL  Q+V + G +P  ++ +AL  TGR A L G G P+ SAAVA  +     GP V G+VR  QV       +   +GL  P ++  SI   GD+++GA STG +++
Sbjct:   12 YAVPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRDAILRGSGEPD-SAAVAILESASAGGPPVRGLVRAVQVAPNKTLFDITLNGLPGPAQYYASIRASGDVSRGAASTGPAWH 146          
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS1_YARLI (Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica GN=CCS1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 53/183 (28.96%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  306 TEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEVSA-AVAEFKGPD-----VFGVVRLAQVNMELAXIEANFSGLSPGEHGWSINEFGDLTKGALSTGQSYNPKIEGNAKEPLGDLRTVVADEIGEGLLSR---VTKILRVSDLMGR 827
            T + V ++CE C D+VKQ L  V G+++V+  L +Q++ + G+S    + +A++  G+ A + G G P  +A  + E   P+     + G+ R+  V+  LA I+   +GL  G +  SI   GD++    S G  Y         + LG +    +D    GL S    V    ++S L+GR
Sbjct:    5 TTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKDAIVRGTGQPNSAAVCILESHAPEDQAQPIKGLARIVSVSKTLALIDITLNGLPKGTYYPSIRTSGDISDAPQSLGGVY---------QALGSVEVNESDS-ASGLFSGQAFVKSETQISSLIGR 177          
BLAST of EY735759 vs. ExPASy Swiss-Prot
Match: CCS1_KLULA (Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis GN=CCS1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.012e-11
Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  312 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEVSAAVAEF----KGP---DVFGVVRLAQVNMELAXIEANFSGL-SPGEHGWSINEFGDLTKGALSTG 689
            Y V+M CE C + +++ L+ V G+KNV  D+ + ++ + G +    +  AL+  GR   + G G P  SAAV+       GP    V G+VR+ +V  +    + N +G+  PG +  S+   GDL++G  STG
Sbjct:   13 YAVEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALKNCGRDGIIRGTGKPN-SAAVSILGQYTTGPFENTVKGLVRIVEVAQKKTFFDINLNGVEKPGLYYASVRASGDLSEGVKSTG 145          
The following BLAST results are available for this feature:
BLAST of EY735759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCS_PIG2.149e-2538.17Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_RAT3.665e-2539.89Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_MOUSE1.819e-2438.80Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS_HUMAN1.819e-2438.86Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS1_DEBHA2.381e-1630.16Superoxide dismutase 1 copper chaperone OS=Debaryo... [more]
CCS1_ASHGO1.307e-1437.50Superoxide dismutase 1 copper chaperone OS=Ashbya ... [more]
CCS1_YARLI9.364e-1328.96Superoxide dismutase 1 copper chaperone OS=Yarrowi... [more]
CCS1_KLULA3.012e-1132.84Superoxide dismutase 1 copper chaperone OS=Kluyver... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735759 ID=EY735759; Name=EY735759; organism=Citrus sinensis; type=EST; length=839bp
CCACGCGTCCGAACACGAAAAAATGGCTATTCTGAGGACAGTGGCAACGT
TAGCAACAGCCACAACAACAACAGCAGTAGCGGCCTTTGCCTTCTCTTCT
TCTTCTTCTTTTACGTCAAAATCTCATCAACCCAAATCCCAAAATCTCTC
CTTTTTCTCTTCACAATCTCTCTCACTTCTCTATTCAAATAAATCGCCTC
TTGTCAAAAACTTCAGCAACCCACCTTCCGCTCTTCCCATGGACGCTCCC
ACATCTGATCACAAAAACACATCCCAGGGGGGATCAGGGGTTGCCTGAGC
TTCTGACAGAATACATGGTGGACATGAAGTGTGAGGGTTGCGTTGATGCC
GTCAAGCAGAAGTTGCAGACTGTTACTGGAGTCAAGAATGTTGAGGTGGA
CTTGAGCAATCAAGTTGTGAGAATTTTGGGATCTTCACCTCTGAAGACCA
TGACCGAAGCTTTGGAGCAAACGGGACGAAAAGCCCGGTTAGTTGGACAA
GGGGTGCCTGAAGTCTCCGCTGCCGTTGCTGAATTCAAAGGTCCAGATGT
ATTTGGTGTGGTTCGCTTGGCTCAAGTGAATATGGAATTGGCTANGATTG
AAGCCAACTTTAGTGGGCTTTCACCTGGAGAACATGGCTGGTCTATTAAT
GAATTTGGTGATCTGACAAAAGGTGCACTGAGCACTGGGCAAAGTTATAA
TCCAAAGATTGAAGGAAATGCGAAAGAGCCACTGGGTGACCTGAGAACAG
TAGTTGCTGATGAGATAGGTGAGGGCCTCCTCTCACGTGTCACCAAAATT
CTGAGAGTTTCTGATCTGATGGGGCGAGCCAGATGGGCT
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