EY735664

Overview
NameEY735664
Unique NameEY735664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735664_ssr520 microsatellite EY735664_ssr520:520..529. BLAST: Citrus ESTs to Prunus persica proteins V1
EY735664_ssr659 microsatellite EY735664_ssr659:659..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY735664 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.500e-13
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 3 
Query:   18 LLAIAEYLEKHGNIEDANQYLRVIHRFGLSSLPLYKSLLRMHLNAQKPAFDILKMMEKDKI 200
            ++AIAEY EK   IE+A  Y+R +HR GL+SLPLY+ LLRMH +A++PA+DI +MM+ DK+
Sbjct:  431 VMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
The following BLAST results are available for this feature:
BLAST of EY735664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP400_ARATH1.500e-1357.38Pentatricopeptide repeat-containing protein At5g27... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-D10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735664 ID=EY735664; Name=EY735664; organism=Citrus sinensis; type=EST; length=864bp
CCACGCGTCCGGTTACTTTATTAGCCATTGCTGAGTACTTAGAAAAGCAT
GGAAATATAGAAGATGCAAACCAATATCTTAGAGTTATCCATCGTTTTGG
TCTTTCAAGTTTACCATTGTATAAATCATTGCTTAGAATGCACCTAAATG
CCCAGAAACCTGCTTTTGACATCCTTAAAATGATGGAGAAGGATAAAATT
GAGATGGATGATGAGACTTCTACCCTTGTCCAAGCCTTTAACTTGTAAGA
AAACTATGGACTCAAACCTACTGGCTTCCTGCAGAGACTGGAGGAAAGCA
GTTAAAATCTTTACTGGGTTTGTTTTCCAAAACCAGGTGAGCAAAGGAGC
TGTGAAATCTACCCCATGACCAGAGGTCTGAGGAAATTTTATTGGTTGTT
TGAAACGTCAGTTACAGTATTTAAATGGAAGCAAAGCATTTTGCCACATT
TGTGCAGCTTCTAGTTTTATGGATGTTGCTTGAGCAGTGGCGACAGTTAA
CAATAATGTACCATACATGATATATATATAGTCTAGAAGACATTCATACA
ANNNANNANNNNNNNGNNGNNNNNNGNGGGNNGNGGGGGGCGNNGGGGGN
GNNGGGGGGGGNGGGAGGGGGGGGGGGGGGGGGGGGATTTTCGAGGNAAN
AAGAAGGGGGGGAGGGGAGGGGAAGAGGGGAGGGAGGAGGGGGGAGCGGG
GGGGGGGAGNNAAANGGGAGGGGGCAGAGAGAAAGAAAGGGAGGGAGCAN
NGGGGCCGACCACGAGGAAGGGAAAGANGGCGGGGGGAGACAGAGCCGCG
GCCACCCCGCCGCACGAGCAGGCCAATGGGCACCAACCCACACTCCAGCG
CGGTGTGAGTGACG
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