EY735532

Overview
NameEY735532
Unique NameEY735532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length981
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735532 vs. ExPASy Swiss-Prot
Match: YCLC_PSEPU (UPF0065 protein in clcB-clcD intergenic region OS=Pseudomonas putida PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.476e-28
Identity = 70/155 (45.16%), Postives = 94/155 (60.65%), Query Frame = -3
Query:   32 DAIALTLAKHMSSTSGRQCS*STTSPAPTANIAAEEVSRSPADGYTLLYNTSSIASSPALYNKRLSYDVSKDLIPVARTASLPIVLVVPAKSSLKSAAELVAYAKAHPGKLNYASAGNGNVTHLASLSFEDAVGIKGTHIPYKGEAPALADLMAG 496
            D ++  LA+ +S T G+  +     P     I + EV+RSPADGYTLL N++ +A     Y   ++YD  K   PVA  A++P VLVVPA S  K A  L+AYAKA+PGK+++ASAG G   HLA+       G+   H+PYKG  PA ADL+AG
Sbjct:   48 DMVSRVLAQRVSETLGQPVT-VENRPGSGGIIGSAEVARSPADGYTLLVNSTGLAVDKWFY-PNVAYDARKAFAPVALLATIPSVLVVPADSPYKDARSLLAYAKANPGKVSFASAGMGTSIHLAAALLAAQAGVDLLHVPYKGSTPAAADLIAG 200          
BLAST of EY735532 vs. ExPASy Swiss-Prot
Match: YTCB_PSESQ (UPF0065 protein in tcbD-tcbE intergenic region OS=Pseudomonas sp. (strain P51) PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.541e-23
Identity = 59/158 (37.34%), Postives = 96/158 (60.76%), Query Frame = -3
Query:   23 DAIALTLAKHMSSTSGRQCS*STTSPAPTANIAAEEVSRSPADGYTLLYNTSSIASSPALYNKRLSYDVSKDLIPVARTASLPIVLVVPAKSSLKSAAELVAYAKAHPGKLNYASAGNGNVTHLASLSFEDAVGIKGTHIPYKGEAPALADLMAGMVD 496
            DAIA  +++ MS + G+Q      + +    I ++ V+++P+DG+T+L N++ +      Y  R+ Y   +D +PV   A+LP VLVVPA S  +   +L+  A+ +PGKL++ASAG G   HLAS        ++  H+PY+G +PA++DL+AG VD
Sbjct:   56 DAIARIISRKMSESIGQQVVVDNRAGSGGI-IGSDLVAKAPSDGHTILINSTGLVVDRFFY-PRVPYQSDRDFVPVVLAATLPSVLVVPADSRFRDITQLLKAARENPGKLSFASAGLGTSIHLASALLAARANVELLHVPYRGSSPAVSDLVAGRVD 211          
BLAST of EY735532 vs. ExPASy Swiss-Prot
Match: BUGT_BORPE (Protein bugT OS=Bordetella pertussis GN=bugT PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.764e-16
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = -3
Query:   26 TDAIALTLAKHMSSTSGRQCS*STTSPAPTANIAAEEVSRSPADGYTLLYNTSSIASSPAL-YNKRLSYDVSKDLIPVARTASLPIVLVVPAKSSLKSAAELVAYAKAHPGKLNYASAGNGNVTHLASLSFEDAVGIKGTHIPYKGEAPALADLMAGMV 499
            TD +A  LA+ +  + G+       + A    I  +  ++S ADGYTLL ++SS   +  L     + Y V +DL+PV+    +P+VLV   K  L S   L+A  KA PG++ +A    G+  HL +  F+   G     IPYKG  PA+ DL+ G+V
Sbjct:   45 TDVMARVLARTLQDSLGQPVVVQNRAGAGGV-IGTDATAKSAADGYTLLLSSSSAPLAVGLSLMPSIPYKVLEDLVPVSMVGDVPLVLVTNPKLKLDSLDALIAQCKARPGEVAFALNALGSQAHLLTELFQLRTGAAINMIPYKGSGPAVVDLLGGVV 202          
BLAST of EY735532 vs. ExPASy Swiss-Prot
Match: YTUY_AGRVI (UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region OS=Agrobacterium vitis PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.950e-15
Identity = 53/171 (30.99%), Postives = 88/171 (51.46%), Query Frame = -3
Query:   23 IWIILDSRSAECTDAIALTLAKHMSSTSGRQCS*STTSPAPTANIAAEEVSRSPADGYTLLYNTSSIASSPALYNKRLSYDVSKDLIPVARTASLPIVLVVPAKSSLKSAAELVAYAKAHPGKLNYASAGNGNVTHLASLSFEDAVGIKGTHIPYKGEAPALADLMAGMVD 535
            + I++ + +   +D +A  +A+ MS T G+Q        A   ++ A  V+++  DGY LL     +A+  ALY   L+Y   +D   V     +P+ +V       K+ A+LVA  K +   + + +AG G V+ L     +DA+G K T +PYKG  PA+ DL+ G +D
Sbjct:   55 VTIMVPAAAGGPSDTVARLVAQSMSKTLGQQVLVENMGGAG-GSLGAANVAKADPDGYRLLLYHIGVATFAALY-PNLAYKPIEDFSSVGLITEVPMTIVGRKDLEPKTFADLVAIVKKNATTVTFGTAGTGAVSDLCGRLLQDALGTKITLVPYKGMGPAMTDLIGGRID 223          
BLAST of EY735532 vs. ExPASy Swiss-Prot
Match: Y4329_BORBR (UPF0065 protein BB4329 OS=Bordetella bronchiseptica GN=BB4329 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.345e-15
Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = -3
Query:   26 IWIILDSRSAECTDAIALTLAKHMSSTSGRQCS*STTSPAPTAN--IAAEEVSRSPADGYTLLYNTSSIASSPALYNKRLSYDVSKDLIPVARTASLPIVLVVPAKSSLKSAAELVAYAKAHPGKLNYASAGNGNVTHLASLSFEDAVGIKGTHIPYKGEAPALADLMAGMV 535
            I +++ + +    D  A  +++ +S   G+        P P AN  IAA+ V+ +  DGYTLLY  +S      L  K L YD  KDL PVA    +P+ + V AKS++++  ELVA AK    ++ +A+ G  +++ L   S     G +  +I Y    PA  D++ G V
Sbjct:   47 IRMVVAAGAGSSVDVFARLVSERLSKALGQAV---IVDPRPGANGTIAAQAVASAKPDGYTLLYAGNSALVVAPLMTKDLPYDAEKDLEPVAPVVYVPLAIAVGAKSAIQNIQELVAGAKT--DEVFFATPGAASLSRLIGESINQKAGTRLVNIAYPSSPPAHTDIIGGQV 213          
BLAST of EY735532 vs. ExPASy Swiss-Prot
Match: YGB7_RALEU (UPF0065 protein in gbd 5'region OS=Ralstonia eutropha PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.675e-15
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = -3
Query:   26 IWIILDSRSAECTDAIALTLAKHMSSTSGRQCS*STTSPAPTANIAAEEVSRSPADGYTLLYNTSSIASSPALYNKRLSYDVSKDLIPVARTASLPIVLVVPAKSSLKSAAELVAYAKAHPGKLNYASAGNGNVTHLASLSFEDAVGIKGTHIPYKGEAPALADLMAGMV 535
            I +++   +   TD     LA + S   G+        P     + A+ +  +  DGYTL      +   P  Y  ++++D  KDL  +   A     LVVPA S +K+  E +AYAKA+PGKL Y S G+    HL         G++ +HIPYKG + ++  L+ G V
Sbjct:   38 IRLVIGYTAGGSTDIPFRVLADNASKILGQPVI-VENKPGAGGVLPAQMMQSTAPDGYTLAQVAMPVYRLP--YTTKINWDPVKDLNYIINLAGYSFGLVVPADSPIKTMQEYIAYAKANPGKLTYGSPGSMTTLHLTMEELAMKQGVQFSHIPYKGNSESMQALLGGHV 204          
BLAST of EY735532 vs. ExPASy Swiss-Prot
Match: Y148_BORPE (UPF0065 protein BP0148 OS=Bordetella pertussis GN=BP0148 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.183e-12
Identity = 52/160 (32.50%), Postives = 79/160 (49.38%), Query Frame = -3
Query:   23 TDAIALTLAKHMSSTSGRQCS*STTSPAPTANIAAEEVSRSPADGYTLLYNTSS-IASSPALYNKRLSYDVSKDLIPVARTASLPIVLVVPAKSSLKSAAELVAYAKAHPGKLNYASAGNGNVTHLASLSFEDAVGIKGTHIPYKGEAPALADLMAGMVD 499
            TD IA   A  M+   G+        P+    +A + V+++  DGYT+L  +++    +P +Y K L + +   L P+A   + P VL+        +  EL+ Y K +PGKLNY S G G   HL     +  +G+   HIPY+G+A  L  L A  VD
Sbjct:   44 TDLIARQAALGMAEKLGQPVI-IENKPSAGHIVAMQTVAQATPDGYTILLGSNTGFTVAPHMY-KNLPFRIDT-LQPIAPINTAPTVLLARPDFPANNLTELIQYIKDNPGKLNYGSFGIGTSAHLGMEIMKSDLGLNIMHIPYRGDAQGLLALKAKEVD 200          
The following BLAST results are available for this feature:
BLAST of EY735532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YCLC_PSEPU4.476e-2845.16UPF0065 protein in clcB-clcD intergenic region OS=... [more]
YTCB_PSESQ2.541e-2337.34UPF0065 protein in tcbD-tcbE intergenic region OS=... [more]
BUGT_BORPE1.764e-1634.59Protein bugT OS=Bordetella pertussis GN=bugT PE=3 ... [more]
YTUY_AGRVI1.950e-1530.99UPF0065 protein in the TAR-I ttuE-ttuC' intergenic... [more]
Y4329_BORBR4.345e-1531.98UPF0065 protein BB4329 OS=Bordetella bronchiseptic... [more]
YGB7_RALEU5.675e-1531.18UPF0065 protein in gbd 5'region OS=Ralstonia eutro... [more]
Y148_BORPE1.183e-1232.50UPF0065 protein BP0148 OS=Bordetella pertussis GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-G09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735532 ID=EY735532; Name=EY735532; organism=Citrus sinensis; type=EST; length=981bp
TTCCGGGGTCCGGGATTCCCGGGTCGACCATGCCGGCCATCAAATCGGCC
AGCGCGGGCGCTTCGCCCTTGTATGGAATATGCGTGCCCTTGATGCCGAC
GGCGTCCTCGAACGACAGCGAAGCCAGGTGCGTGACGTTGCCGTTGCCGG
CCGATGCGTAGTTGAGCTTGCCGGGATGCGCCTTGGCGTAGGCCACCAAC
TCCGCTGCGCTCTTGAGCGAAGACTTGGCGGGAACCACCAGCACGATGGG
CAGGCTGGCGGTCCGTGCGACCGGGATCAAATCCTTGGAGACATCGTACG
AAAGGCGCTTGTTGTACAGCGCCGGGCTCGACGCAATGGAAGACGTGTTG
TACAGCAAGGTATAGCCGTCGGCCGGAGAGCGGCTGACTTCTTCGGCGGC
GATATTTGCCGTTGGCGCCGGGCTTGTTGTCGATCAGGAACATTGGCGCC
CCGAGGTGCTGGACATATGCTTGGCCAGCGTGAGCGCGATTGCGTCGGTG
CACTCTGCCGAACGAGAATCCAATATAATCCATATTTATTTGTAAGAATG
ATGAATTCTTCAAAAAATAATTATAATAGAAATATATATCAATTCGTATT
ATAAAATATATAAAAAATTTAAAATTCAATATACTTTAATAAATTATTAT
GTAATTTTTCAATAATTACTTCAATCATATGTGTTCAAGATTTCCTCATA
AACTTTATAAATAGTAAATATGTACATGCAGAGTTGTATGAAAATTCCTT
ATTGAGATAAATAGGATACAATGTAGAAGTAAATAATAATATTAACATAA
TTCTAGATTTATATAATTACTTGTTGGATTCTATATCTGAATAATAACGT
TTTATTGTTTCTACTTTTTGATAAATTCGAATAGAGTTATGATTCAGACG
GCTAACAAAGTACTAATAAGTTTTTGAATGACATTATCAAATTAAATCAA
TATTAATATGAATTGATCCATAAATTGTGTG
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