EY735516

Overview
NameEY735516
Unique NameEY735516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY735516 vs. ExPASy Swiss-Prot
Match: CZCR_RALME (Transcriptional activator protein czcR OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=czcR PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.834e-12
Identity = 26/41 (63.41%), Postives = 36/41 (87.80%), Query Frame = -3 
Query:    1 FDVIVLDVMMPKMDGWEVLRRLRKEADTPVLFLTARDDIAD 123
            +DVI+LDVM+P MDGW V++ +R +++TPVLFLTA DD+AD
Sbjct:   45 YDVIILDVMLPGMDGWTVIKSIRSKSETPVLFLTALDDVAD 85

HSP 2 Score: 29.6462 bits (65), Expect = 2.834e-12
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = -2 
Query:  122 LLNG*QELGYSVSLARDGVDGLHQALETPF 211
            L  G  E G+ V +A +G DGLH A ET +
Sbjct:   16 LQKGLSESGFVVDIANNGGDGLHMAEETDY 45
The following BLAST results are available for this feature:
BLAST of EY735516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CZCR_RALME2.834e-1263.41Transcriptional activator protein czcR OS=Ralstoni... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735516 ID=EY735516; Name=EY735516; organism=Citrus sinensis; type=EST; length=644bp
GTCGGCAATGTCGTCCCGGGCGGTGAGGAACAGCACCGGTGTGTCGGCTT
CCTTGCGCAGGCGACGCAGCACTTCCCAGCCGTCCATCTTCGGCATCATC
ACGTCCAGCACGATCACGTCGAAACGGGGTTTCCAGGGCCTGGTGCAAAC
CGTCCACACCGTCTCGGGCGAGGCTCACGGAGTAACCCAGTTCCTGCTAG
CCGTTTAACAAGGAAGTTGGCCCGCCTTGGGCTCAGCCTCCAACTACCAA
AGGATATTCCTGGTAATTTGCCCTGGCGAATGGGCCGAGTGTTTAAATAG
AAGTAGATGGAACCCCTAAAAAATTGGTAGTTGGGGATAGACAATGTACT
GTAAAATGAATAATTCAAAAAGTGGAATCCAAGGATATTGATAATACGAA
AAAGAAGATAACTAGGACTAGAAAAAGTTTACAATATCATTTATAGAATG
AACAAACTGGCACAAACAAATTACTTTTTTTGTTTTCTTGGGCGATTTAC
AATATATATGATTATTATTATAATAATTACCATACGTATATGAGAGTAGA
GTAATACGTAAGATATCGATTAACATATGAGTCTCAATACATATCGAAAA
TATTTAACAAAGCTAATTATAACTAACTAAAAATGTAACAGCAA
back to top