EY735512

Overview
NameEY735512
Unique NameEY735512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735512_ssr138 microsatellite EY735512_ssr138:138..149. BLAST: Citrus ESTs to Populus V2 proteins
EY735512_ssr170 microsatellite EY735512_ssr170:170..185. BLAST: Citrus ESTs to Populus V2 proteins
Homology
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BLAST of EY735512 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.119e-12
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  296 GHQTYSET---------RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 508
            GH+ Y  +          G++  ++ TFDE++P ++D LV+PGGRAPE + +N+  +++ RK    GK +A+ICHG  IL
Sbjct:   27 GHEVYIASFEKGVITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQIL 106
[Close]
BLAST of EY735512 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.298e-12
Identity = 29/68 (42.65%), Postives = 47/68 (69.12%), Query Frame = 2 
Query:  305 TYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 508
            T +   G++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  IL
Sbjct:   39 TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQIL 106
[Close]
BLAST of EY735512 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2 
Query:  296 GHQTY--SETRG-----HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 508
            GH+ Y  S  RG     H + +N    FDE+DP ++D LV+PGGRAPE + +N+  + + +K    GK +ASICHG  IL
Sbjct:   27 GHEVYVASFQRGKITGKHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGPQIL 106
The following BLAST results are available for this feature:
BLAST of EY735512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PFPI_PYRFU7.119e-1238.75Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]
PFPI_PYRHO9.298e-1242.65Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRKO1.214e-1143.75Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-D06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735512 ID=EY735512; Name=EY735512; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGGGGAGAGTGAATCCTCTGGAAATGGCAAACAGCAAAGGA
GGCAAGAGGAGCGTGCTGCTACTATGCGGCGATTACATGGAAGACTACGA
GGTTCCTTCTTTCTTCTCCTTCCTGCATATTCTTTAGTTAATTAATTAAT
CAAATAAATATTGAATATTTTTGTTTGTTTGTTTGAGGCGATGGTGCCTT
TTCAAGCATTACTGGCTTTCGGAGTCTCAGTTGACGCCGCGTGTCCCGGA
AAGAAATCCGGTGATGTTTGCCCCACTGCAGTTCATCAATCGACTGGTCA
TCAGACATATTCCGAGACACGTGGTCACAATTTCGCACTCAATGCGACAT
TTGATGAAATTGACCCGACCAAATATGATGGCTTGGTCATACCAGGAGGA
AGAGCTCCAGAATATCTTGCTATGAATGATTCTGTGATTGACTTAGTGAG
AAAATTCTCCAACTCGGGCAAAACAATTGCTTCCATTTGCCATGGGCAGT
TAATATTGGGCAGCTGCTGATGTGGTCCAAAGGTCGAAAAGTGCCCAGCA
TATCCTCCTGGGAAAACCTGTGCTTATTGGCCGCTGGTGGATCTTGGATT
GAGGCCAGAAACCATGGGCACCTTGGGGTGTTTGATGGGAAATCCATTAG
GGGGGCTACCTAATAGGGTTAATCCTGAATTCATTCCGTATTTTTTTTAA
GAAACGGGGGGGCACCAGATTGGGAATCTGATGAAAAGAATCTTATTTTT
TTAGGGGAGAAGCAGTTACAAATTGTTAGGGTTGCATTTCTTATTAAGTA
ATATCTAAAGCAAAAATATTTGCAATGTATTCAGTTAATTACACGTAAAA
CTATATAGAGGCCTTGTTAATCTCTGTGACCACAAACCTGCAGCCAATTT
TCATGGGCTTGTCTTATGGACATAATCTGGGGAAT
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