EY735479

Overview
NameEY735479
Unique NameEY735479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length993
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 1.163e-23
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKVFT*EGQCPWYETSIVQGVSIPYLGYRGRRPLCTSLFSISL*GYGKVPR 640
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV       P   T+       P   YR R     S  S    G+   PR
Sbjct:  136 QNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTT---DRGFPRSRYRARTTNYNSSRSRFYSGFNSRPR 285          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 1.163e-23
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKVFT*EGQCPWYETSIVQGVSIPYLGYRGRRPLCTSLFSISL*GYGKVPR 640
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV       P   T+       P   YR R     S  S    G+   PR
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTT---DRGFPRARYRARTTNYNSSRSRFYSGFNSRPR 289          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 1.163e-23
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKVFT*EGQCPWYETSIVQGVSIPYLGYRGRRPLCTSLFSISL*GYGKVPR 640
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV       P   T+       P   YR R     S  S    G+   PR
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTT---DRGFPRARYRARTTNYNSSRSRFYSGFNSRPR 289          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.590e-23
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKV 235          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.383e-23
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV
Sbjct:  130 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 234          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 235          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.118e-21
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  263 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            KE  D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV
Sbjct:   49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKV 127          

HSP 2 Score: 21.557 bits (44), Expect = 1.118e-21
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3
Query:  501 PKRDNVPGM 527
            PKR NVPGM
Sbjct:  129 PKRTNVPGM 137          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.856e-21
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  194 QAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKVFT*EGQCPWYETS--IVQGVSIPYLGYRGRRPLCTSLF 604
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV +     P   T+    +G S    G R  R  C S F
Sbjct:   65 QSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARG-SFRGRGARASRACCHSTF 205          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.424e-21
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  194 QAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKVFT*EGQCPWYETS--IVQGVSIPYLGYRGRRPLCTSLF 604
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV +     P   T+    +G S    G R  R  C S F
Sbjct:   65 QSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARG-SFRGRGARVSRACCHSTF 205          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.440e-20
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  263 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KV
Sbjct:   87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKV 165          

HSP 2 Score: 25.0238 bits (53), Expect = 7.440e-20
Identity = 15/47 (31.91%), Postives = 19/47 (40.43%), Query Frame = 3
Query:  492 RFLPKRDNVPGMKPVSSKAFQSLTWGTEGGGPYVPPYFLFPFRDMGR 632
            + LPKR N+PG+       F+    G  G           PFR  GR
Sbjct:  164 KVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPFRGRGR 210          
The following BLAST results are available for this feature:
BLAST of EY735479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PABP2_MOUSE1.163e-2343.79Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN1.163e-2343.79Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN1.163e-2343.79Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA2.590e-2353.33Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PAB2B_XENLA3.383e-2353.33Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR9.842e-2352.38Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PAB2_SCHPO1.118e-2167.09Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_DROPS1.856e-2143.66Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
PABP2_DROME2.424e-2143.66Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
EPA2B_XENLA7.440e-2053.16Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-G10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735479 ID=EY735479; Name=EY735479; organism=Citrus sinensis; type=EST; length=993bp
CAGAAGAGAGAGAATGGAGGACCAATAGCACGAGGTTTACGGAGGCGAAA
TCCCTGACGTGGAAGGTGACATGGACGCTCACAATACTGACGTCGACATG
TCGGCGGCCGATGACGACGCCGTCAAGGAGCTGGATGAGATGAAGAAGCG
GTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGATGCAAGCTA
AGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTGGCTGCT
AATCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTTTGTTGGCAA
TGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCCAATCCT
GTGGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGCCAGCCA
AAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCAAGAGGC
TCTCCCGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGGTTTTTA
CCTAAGAGGGACAATGTCCCTGGTATGAAACCAGTATCGTCCAAGGCGTT
TCAATCCCTTACTTGGGGTACCGAGGGCGGAGGCCCCTATGTACCTCCTT
ATTTTCTATTTCCCTTTAGGGATATGGGAAGGTTCCAAGGTTAGAAAGGG
CAATGGAGGTACTGGCCCTACTAATACCAAAATTGTGCTCCTGGTGAGAA
AAGGGGGAACTTTTGGGGGATATCCCTAAAATGGAAAAATTTCAAGGGTA
CATGGGGGGCTTTATGTTTTCCCGGGTTTAAAAAAGGAAAAACAAGGATT
TTTTTAACCTACCTGTGTTTTTATTATTTGGTGGTTCTTGTATGGGTATT
CAACATTTTTTTTAACTGGGAGAATTTTTTAGGGGAATTTTTTTTTGGGT
TGAGAATTTTGGGGGTGGAGGGGGGAAAACTTTATCCCACAATTATTTGG
GGCGAGTAGGGGGCGAAGAAAACAAAAAGCGGGGGGGGTTAAG
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