EY735469

Overview
NameEY735469
Unique NameEY735469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1048
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY735469 vs. ExPASy Swiss-Prot
Match: PECS_DICD3 (HTH-type transcriptional regulator pecS OS=Dickeya dadantii (strain 3937) GN=pecS PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.315e-24
Identity = 54/135 (40.00%), Postives = 85/135 (62.96%), Query Frame = 1 
Query:   34 VLSQWEQECPNLDISPMSVLSRVFRFHAFAARDVGQAFKRHNLHQGEFDVLATLYRTGAPHAMNPQKLVAALLLTSGAMTNRLDRLEQAGLLARTPNPDDRRGVIVALTPEGLRVIKQVLKDYLRELEALLAPLN 438
            ++ QW  E P+LD+ PM V+  + R      R + + F ++ L   EFD+LATL R GAP+A +P ++V AL++ +  +T+RLDRLEQAG L R P   DRR V + LT EG  +I +V+++++     +L+P +
Sbjct:   10 IVQQWRNERPDLDVEPMLVIGTLSRVSLLIDRALDKVFSKYKLSAREFDILATLRRRGAPYAYSPSQIVNALMINNSTLTSRLDRLEQAGWLRRMPIEGDRRSVNIQLTDEGFALINRVVEEHVENERDILSPFS 144
The following BLAST results are available for this feature:
BLAST of EY735469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PECS_DICD34.315e-2440.00HTH-type transcriptional regulator pecS OS=Dickeya... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735469 ID=EY735469; Name=EY735469; organism=Citrus sinensis; type=EST; length=1048bp
GTTCCGGGGTCCGGAATTTCCCGGGTCGACTTGGTGCTGTCGCAGTGGGA
GCAGGAATGCCCCAACCTGGACATCTCGCCGATGAGCGTCCTCAGCCGCG
TGTTCCGCTTCCACGCCTTCGCCGCGCGCGACGTCGGCCAGGCATTCAAG
CGCCACAACCTGCACCAGGGCGAATTCGACGTGCTCGCGACCCTGTACCG
CACCGGCGCGCCGCACGCCATGAATCCGCAGAAGCTGGTCGCGGCGCTGC
TGCTGACCTCGGGCGCCATGACCAACCGGCTGGACCGCCTGGAACAGGCC
GGCCTGCTGGCGCGCACGCCGAACCCCGATGATCGCCGCGGCGTCATCGT
GGCGCTGACCCCCGAAGGCCTGCGCGTCATCAAGCAGGTGCTCAAGGATT
ACCTGCGCGAACTCGAAGCGCTGCTCGCCCCCCTCAATGCCCGCCGAACA
CCGCCAGATGGCCGGACTGCTGAAAAAACTGCTGATCCCGCCCGACCAGG
AAACGCCCCGGCGGCATCACCGCCAGAAGCCTTTCCCCCGCCAATCCCGA
CACCCGCCTTAAATGAAGGCGATTCCAGGACAAACACGACCAGATCAATA
CGCCGGTTATCCAGCTGAAGTCAGAGGTCACCGGGAAGGGGGATTTGCCA
AAATAATATAAATATGACATATGATAATGTGCTACAACAGAAAGATAAAA
ATGCCTAAAAACGTAGAAGGTATGACTCTTTTTGGATCTTGAAATATGTG
TTATCGACGGTAGCACATTAATAAAAAACTCTGATAAGGAATAAACAACG
AAACACAAAACAGAAGTAAACAAGATCCAACAAAATAGCCAGCCACACAT
GAGCCAAGAGCGATCAGAAATTGACAGGATAGCATAGACTCAAAGATAAA
AACACAAGGGGTGGAAGATTATTAACAAAACTAGTATAGAAAAGGAAAGG
AGAAAAAAACTACAATGAAGAATAATAGGCGAAAGACACAAAAATAAAGA
CACACGAAAGAATAAAAGTCAAAGTAAGACTACACAAACAAGAAACAA
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