EY735467

Overview
NameEY735467
Unique NameEY735467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735467 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 5.010e-78
Identity = 134/203 (66.01%), Postives = 163/203 (80.30%), Query Frame = 3
Query:    3 YEQAAFGSKQIVRERAISATYLCLRVNLIYVNSEDIRETGYTYIMPKNILKRFICIAHLRTRISGYL*GISPPDNPQVKEIRCIALPRRWGTHHQVRLPSALPEHDFLNDLEPLGWMRTAPDELPQLSPHDLSSQARILDDNNQWDGEKCINLTCSSPPGSCSLTAYKLTPSGYEWGRVNKDTGSNPPGYLPTHYEKVQMLLS 611
            YE   F SK   R RAISA  L LR N IYV+S+DI+ETGYTYI+PKN+LK+FICI+ LR +I+GYL G+SPPDNPQVKEIRCI +  +WGTH  V LPS LP+H++L ++EPLGW+ T P+E PQLSP D+++ A+I+ DN  WDGEK I +TCS  PGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLS
Sbjct: 2062 YETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPSQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLS 2264          
BLAST of EY735467 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 1.458e-77
Identity = 133/203 (65.52%), Postives = 162/203 (79.80%), Query Frame = 3
Query:    3 YEQAAFGSKQIVRERAISATYLCLRVNLIYVNSEDIRETGYTYIMPKNILKRFICIAHLRTRISGYL*GISPPDNPQVKEIRCIALPRRWGTHHQVRLPSALPEHDFLNDLEPLGWMRTAPDELPQLSPHDLSSQARILDDNNQWDGEKCINLTCSSPPGSCSLTAYKLTPSGYEWGRVNKDTGSNPPGYLPTHYEKVQMLLS 611
            YE   F SK   R RAISA  L LR N IYV+S+DI+ETGYTYI+PKN+LK+FICI+ LR +I+GYL G+SPPDNPQVKEIRCI +  +WGTH  V LP  LP+H++L ++EPLGW+ T P+E PQLSP D+++ A+I+ DN  WDGEK I +TCS  PGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLS
Sbjct: 2062 YETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLS 2264          
BLAST of EY735467 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.591e-76
Identity = 132/203 (65.02%), Postives = 163/203 (80.30%), Query Frame = 3
Query:    3 YEQAAFGSKQIVRERAISATYLCLRVNLIYVNSEDIRETGYTYIMPKNILKRFICIAHLRTRISGYL*GISPPDNPQVKEIRCIALPRRWGTHHQVRLPSALPEHDFLNDLEPLGWMRTAPDELPQLSPHDLSSQARILDDNNQWDGEKCINLTCSSPPGSCSLTAYKLTPSGYEWGRVNKDTGSNPPGYLPTHYEKVQMLLS 611
            YE A+F S+   R RAIS+T L LR   IYVNS+D+++TGYTYI+PKNILK+FI I+ LRT+I+G++ G+SPPDNPQVKEIRCI L  + G+H QV LP+ LP+H+ L D EPLGWM T P+ELPQLSP D+++ A++L DN  WDGEK + +TCS  PGS SLTAYKLTPSGYEWG+ N D G+NP GY+PTHYEKVQMLLS
Sbjct: 2055 YETASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLS 2257          
BLAST of EY735467 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 2.464e-64
Identity = 123/204 (60.29%), Postives = 150/204 (73.53%), Query Frame = 3
Query:    3 YEQAAFGSKQIVRERAISATYLCLRVNLIYVNSEDIRETG-YTYIMPKNILKRFICIAHLRTRISGYL*GISPPDNPQVKEIRCIALPRRWGTHHQVRLPSALPEHDFLNDLEPLGWMRTAPDELPQLSPHDLSSQARILDDNNQWDGEKCINLTCSSPPGSCSLTAYKLTPSGYEWGRVNKDTGSNPPGYLPTHYEKVQMLLS 611
            +EQ  F SK   R RAISAT L LR N IYVNS++ +ETG +TY+ PKNILK+FI IA LRT+I GY  GISPPDNP VKEIRCI +P +WGT   V +P+ LPEH++L DLEPLGW+ T P ELPQLSP D+ + ++I+ DN  WDGEK + ++  S    C+LTAY LTPSG+EWG+ NKD+  N  GY P  YEKVQMLLS
Sbjct: 2051 HEQKVFSSKTDWRVRAISATNLHLRTNQIYVNSDNAKETGGFTYVFPKNILKKFITIADLRTQIMGYCYGISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQLSPQDVITHSKIMSDNKSWDGEKTVIISV-SVAWPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLS 2252          

HSP 2 Score: 23.0978 bits (48), Expect = 2.464e-64
Identity = 12/26 (46.15%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  613 DRFLGFLLVPEHRPRKIIKFWGSGNY 690
            DRFLGF +VP+          GS NY
Sbjct: 2253 DRFLGFYMVPDR---------GSWNY 2269          
BLAST of EY735467 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.846e-47
Identity = 106/209 (50.72%), Postives = 137/209 (65.55%), Query Frame = 3
Query:    3 YEQAAFGSKQIVRERAISATYLCLRVNLIYVNSEDIRET-GYTYIMPKNILKRFICIAHLRTRISGYL*GISPPDNPQVKEIRCIALPRRWGTHHQVRLPSALPEHD----FLNDLEPLGWMRTAPDELPQLSPHDLSSQARILDDNNQWDGEKCINLTCSSPPGSCSLTAYKLTPSGYEWGRVNKDTGSNPP-GYLPTHYEKVQMLLS 611
            YE   F SK   R RAIS+  L LR   IYVNS++I ET  YTYI+P+N+L++F+ I+ LRT+++GY+ G SP DNPQ+KEIRCIAL  + G+   V+LPS LP HD     L DLEPLGW+ T   ELP LS  D+++ A+IL  + +WD  K + LT S  PGS SL AY ++  G EWG  N D  S+   GY P+  EK Q+LLS
Sbjct: 2086 YENEKFSSKTEWRNRAISSISLPLRTKNIYVNSDNISETFPYTYILPQNLLRKFVTISDLRTQVAGYMYGKSPSDNPQIKEIRCIALVPQLGSIRNVQLPSKLP-HDLQPSILEDLEPLGWIHTQSSELPYLSSVDVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLS 2292          

HSP 2 Score: 20.4014 bits (41), Expect = 7.846e-47
Identity = 8/11 (72.73%), Postives = 8/11 (72.73%), Query Frame = 1
Query:  613 DRFLGFLLVPE 645
            DR  GF LVPE
Sbjct: 2293 DRIQGFFLVPE 2303          
BLAST of EY735467 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.521e-29
Identity = 76/207 (36.71%), Postives = 123/207 (59.42%), Query Frame = 3
Query:    3 YEQAAFGSKQIVRERAISATYLCLRVNLIYVNSEDIRETGYTYIMPKNILKRFICIAHLRTRISGYL*GISPPDNPQVKEIRCIALPRRWGTHHQVRLPSALPEHDFLND---LEPLGWMRTAPDELPQLSPHDLSSQARILDDNNQWDGEKCINLTCSSPPGSCSLTAYKLTPSGYEWGRVNKD-TGSNPPGYLPTHYEKVQMLLS 611
            YE   F SK   R+ AI+ T L LR+  IYV+++D  E    Y++PKN+LK+FI I+ ++ +++ ++ G+S  D+P+VKEI+ + L  + G    V++ S +P+   L D   LE LGW+ T  +EL  ++  ++++ +++  D  +     CI+++  S PGS SL+AY LT  GY+WG  NKD       G+ PT     Q+LLS
Sbjct: 2141 YESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLS 2342          
The following BLAST results are available for this feature:
BLAST of EY735467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP8_MOUSE5.010e-7866.01Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN1.458e-7765.52Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL3.591e-7665.02Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI2.464e-6460.29Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO7.846e-4750.72Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
PRP8_YEAST2.521e-2936.71Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-E09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735467 ID=EY735467; Name=EY735467; organism=Citrus sinensis; type=EST; length=1026bp
CTTATGAGCAAGCTGCATTTGGTTCCAAGCAGATTGTGCGTGAGAGAGCA
ATATCAGCTACCTATCTCTGTCTTCGAGTTAATCTTATATATGTCAACTC
AGAGGACATAAGGGAGACTGGCTACACTTACATTATGCCGAAGAATATTT
TAAAGAGATTCATCTGCATAGCACATCTTCGAACTCGAATTTCTGGGTAC
TTATAAGGGATAAGCCCGCCTGATAACCCGCAAGTCAAGGAAATTCGTTG
TATTGCCCTGCCACGACGATGGGGCACTCATCATCAAGTTCGTCTTCCTT
CCGCACTCCCTGAGCATGATTTCCTGAATGATCTGGAGCCTTTGGGATGG
ATGCGCACTGCGCCAGATGAGCTTCCACAACTATCGCCTCATGATCTCTC
TTCTCAGGCGCGGATTCTAGATGACAATAATCAATGGGATGGAGAGAAAT
GCATTAACTTGACTTGTAGTTCTCCCCCAGGTTCCTGCTCGTTAACTGCA
TACAAGCTTACTCCAAGTGGTTATGAGTGGGGAAGAGTTAACAAGGACAC
AGGAAGCAATCCCCCTGGATATCTTCCCACTCACTATGAAAAGGTCCAAA
TGCTTCTGAGTGGACCGGTTCCTTGGGTTTCTCTTGGTTCCCGAACACCG
GCCCAGGAAAATTATTAAATTTTGGGGGAGTGGAAACTATACAGTGGAGG
CGTGAAATTTGGGGGTCAGGCTTGGGGGACCCCTCCCCAGAAAACATCCC
TGGAGGAACCTAGGGCCAACCTCATTTCTTGGTATTCCCCACACTTTGGA
GAGAAGGGGAAAAAGGGGCACAAGGGAGACCCCTGGAAAAAAAAATTTTC
CCCCAAACCCCAATTGGGAGGGGTGTTTTTTGGGGGGCCGGTAATCCTTT
CTTGTGGGAAGATTATAAAGGGGGGCCGGGTTTTTTGCCTGTGGACGACC
TCCGGGCTAAATCTCGGGGAAGAACAGTAATTATTTTTCTCTTTCTGACC
CACCCCCCCGCGGGGGGGCGGGGGGT
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