EY735394

Overview
NameEY735394
Unique NameEY735394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1023
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_PSEAE (Beta-hexosaminidase OS=Pseudomonas aeruginosa GN=nagZ PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.526e-70
Identity = 145/203 (71.43%), Postives = 161/203 (79.31%), Query Frame = -1
Query:   25 LLPQPRVGGLKSFLPANMIIRP-QVHELSAAIRAVRPDLLLAVDQERRPGAALAPRVRPA---CPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAPRDFPTGRP 621
            +L  P VGGL  F  A  I  P QV EL AAIRA+RPDLLLAVDQE         R+R      PAMRA+ADNPNAE+LAE CGW+MATEV AVGLDLSFAPVLDLD+QRSAVVG+RAFEGDPERAA+LAGAFIRGM++AGMAATGKHFPGHGWAEADSHVAIP D RSLE+IR +DLVPFARL+ QL A+MPA   +P   P
Sbjct:   21 ILRHPEVGGLIIF--ARNIEHPAQVRELCAAIRAIRPDLLLAVDQE----GGRVQRLRQGFVRLPAMRAIADNPNAEELAEHCGWLMATEVQAVGLDLSFAPVLDLDHQRSAVVGSRAFEGDPERAALLAGAFIRGMHAAGMAATGKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVIYPQVDP 217          

HSP 2 Score: 24.2534 bits (51), Expect = 1.526e-70
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -2
Query:   12 HVIFPQVDPGNSG 50
            HVI+PQVDP  +G
Sbjct:  209 HVIYPQVDPQPAG 221          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_PSEAB (Beta-hexosaminidase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nagZ PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.526e-70
Identity = 145/203 (71.43%), Postives = 161/203 (79.31%), Query Frame = -1
Query:   25 LLPQPRVGGLKSFLPANMIIRP-QVHELSAAIRAVRPDLLLAVDQERRPGAALAPRVRPA---CPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAPRDFPTGRP 621
            +L  P VGGL  F  A  I  P QV EL AAIRA+RPDLLLAVDQE         R+R      PAMRA+ADNPNAE+LAE CGW+MATEV AVGLDLSFAPVLDLD+QRSAVVG+RAFEGDPERAA+LAGAFIRGM++AGMAATGKHFPGHGWAEADSHVAIP D RSLE+IR +DLVPFARL+ QL A+MPA   +P   P
Sbjct:   21 ILRHPEVGGLIIF--ARNIEHPAQVRELCAAIRAIRPDLLLAVDQE----GGRVQRLRQGFVRLPAMRAIADNPNAEELAEHCGWLMATEVQAVGLDLSFAPVLDLDHQRSAVVGSRAFEGDPERAALLAGAFIRGMHAAGMAATGKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVIYPQVDP 217          

HSP 2 Score: 24.2534 bits (51), Expect = 1.526e-70
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -2
Query:   12 HVIFPQVDPGNSG 50
            HVI+PQVDP  +G
Sbjct:  209 HVIYPQVDPQPAG 221          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_PSEA8 (Beta-hexosaminidase OS=Pseudomonas aeruginosa (strain LESB58) GN=nagZ PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.526e-70
Identity = 145/203 (71.43%), Postives = 161/203 (79.31%), Query Frame = -1
Query:   25 LLPQPRVGGLKSFLPANMIIRP-QVHELSAAIRAVRPDLLLAVDQERRPGAALAPRVRPA---CPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAPRDFPTGRP 621
            +L  P VGGL  F  A  I  P QV EL AAIRA+RPDLLLAVDQE         R+R      PAMRA+ADNPNAE+LAE CGW+MATEV AVGLDLSFAPVLDLD+QRSAVVG+RAFEGDPERAA+LAGAFIRGM++AGMAATGKHFPGHGWAEADSHVAIP D RSLE+IR +DLVPFARL+ QL A+MPA   +P   P
Sbjct:   21 ILRHPEVGGLIIF--ARNIEHPAQVRELCAAIRAIRPDLLLAVDQE----GGRVQRLRQGFVRLPAMRAIADNPNAEELAEHCGWLMATEVQAVGLDLSFAPVLDLDHQRSAVVGSRAFEGDPERAALLAGAFIRGMHAAGMAATGKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVIYPQVDP 217          

HSP 2 Score: 24.2534 bits (51), Expect = 1.526e-70
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -2
Query:   12 HVIFPQVDPGNSG 50
            HVI+PQVDP  +G
Sbjct:  209 HVIYPQVDPQPAG 221          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_SHEFN (Beta-hexosaminidase OS=Shewanella frigidimarina (strain NCIMB 400) GN=nagZ PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.516e-37
Identity = 100/216 (46.30%), Postives = 133/216 (61.57%), Query Frame = -1
Query:   52 SVVRRDLLGG*KTAT---LLPQPRVGGLKSFLPANMIIRPQVHELSAAIRAVRPDLLLAVDQER------RPGAALAPRVRPACPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARL--SKQLAAVMPA 666
            S +  DL G   +AT    L  P+VGG+  F   N   + Q+ EL  ++R++RP+LL+AVD E       R G +L P +    PA  A  D   A+Q A++CG++MA E+LA  +DLSFAPVLD++   S V+G R+F   P+  + LA  FI GMN AGMAA GKHFPGHG   ADSH+A+P D R+ EQ+ A D+ PF  L  S+QL  VMPA
Sbjct:    2 SYLMMDLAGLTVSATETAQLQHPQVGGIILF-SRNCENKNQLIELVKSVRSIRPELLIAVDHEGGRVQRFREGFSLIPAMGDILPA--AKGDLTLAKQWAKECGFLMAVELLACDIDLSFAPVLDVN-GISEVIGKRSFSAVPDEVSALAQQFIIGMNEAGMAAVGKHFPGHGSVAADSHIAMPVDPRTKEQVEAFDMQPFKHLIGSQQLQGVMPA 213          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_IDILO (Beta-hexosaminidase OS=Idiomarina loihiensis GN=nagZ PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.310e-37
Identity = 92/202 (45.54%), Postives = 119/202 (58.91%), Query Frame = -1
Query:   37 LLPQPRVGGLKSFLPANMIIRPQVHELSAAIRAVRPD-LLLAVDQERRPGAALAPRVR------PACPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAPRDFP 621
            LL  P V GL  F   N     Q+ EL    RA     LL+AVD E         R R      P+  +++ + +    ++ A   GW+MA EV AVG+D+SFAPVLD+D   S V+G RAF   P   + LA +FI GM+ AGMA TGKHFPGHG  +ADSH+AIP D+R+LEQIRA+DL PF  L ++L  +MPA   +P
Sbjct:   20 LLAAPAVNGLILFT-RNFASLEQLQELIREARAAAAKPLLIAVDHE----GGRVQRFREGFSAIPSMGSLQKIENEDERQRAARDLGWLMAAEVQAVGIDISFAPVLDVD-DCSDVIGDRAFSAVPSEISKLASSFIEGMHEAGMACTGKHFPGHGSVQADSHIAIPEDDRTLEQIRAHDLKPFLSLIQKLDGIMPAHVIYP 215          

HSP 2 Score: 23.8682 bits (50), Expect = 6.310e-37
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -2
Query:   12 HVIFPQVDPGNSG 50
            HVI+PQ+DP  +G
Sbjct:  211 HVIYPQIDPQPAG 223          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_CHRVO (Beta-hexosaminidase OS=Chromobacterium violaceum GN=nagZ PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.196e-36
Identity = 96/202 (47.52%), Postives = 123/202 (60.89%), Query Frame = -1
Query:   37 LPQPRVGGLKSFLPANMIIRPQVHELSAAIRAVR-PDLLLAVDQER-RPGAALAPRVRPACPAMRAL-----ADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAPRDFP 618
            L  P VGG+  F   N     Q+  L+A IRA+R P LL+AVD E  R    L    R   P MR L     AD   A +LAE  G+++A E+ A G+DLSF PVLDLD++R AV+G RAF  DPE  + LA A  +G+   GM + GKH+PGHG+ E DSH  +P D+R+L QI  +DLVPFARL+   + AVMPA   +P
Sbjct:   25 LSHPLVGGVILFR-RNFHNIEQLRALTAEIRALRTPHLLIAVDHEGGRVQRFLDGFTR--LPPMRVLGEAWDADRDQALKLAETVGYVLAAELSACGIDLSFTPVLDLDWERCAVIGNRAFHRDPEAVSALAEALQQGLGRGGMMSCGKHYPGHGYVEGDSHHLMPQDDRTLAQIEQDDLVPFARLADAGMGAVMPAHVLYP 223          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_YERPY (Beta-hexosaminidase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=nagZ PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.075e-35
Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = -1
Query:   52 LLPQPRVGGLKSFLPANMIIRPQVHELSAAIRAVRPD-LLLAVDQERRPGAALAPRVR------PACPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARL--SKQLAAVMPA 621
            +L  P VGGL  F   N     Q+ EL   IRA   + L++AVDQE         R R      PA  +  A+ D   A QLA++ GW+MA E++A+ +D+SFAPVLD+ +  SA +G R+F  DP++A ++A  FIRGM+SAGM  TGKHFPGHG   ADSH   P+D R L +IR +D+V F  L   K L A+MPA
Sbjct:   20 ILKHPLVGGLILF-SRNFHDAEQLRELVRQIRAASHERLVVAVDQE----GGRVQRFRDGFTRLPAAQSFAAINDAATAAQLAQEAGWLMAAEMMAMDIDISFAPVLDIGHV-SAAIGERSFHSDPQQARIMAECFIRGMHSAGMKTTGKHFPGHGAVTADSHKETPHDNRPLAEIRTHDMVIFRELIQRKLLDAIMPA 212          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_YERP3 (Beta-hexosaminidase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=nagZ PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.075e-35
Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = -1
Query:   52 LLPQPRVGGLKSFLPANMIIRPQVHELSAAIRAVRPD-LLLAVDQERRPGAALAPRVR------PACPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARL--SKQLAAVMPA 621
            +L  P VGGL  F   N     Q+ EL   IRA   + L++AVDQE         R R      PA  +  A+ D   A QLA++ GW+MA E++A+ +D+SFAPVLD+ +  SA +G R+F  DP++A ++A  FIRGM+SAGM  TGKHFPGHG   ADSH   P+D R L +IR +D+V F  L   K L A+MPA
Sbjct:   20 ILKHPLVGGLILF-SRNFHDAEQLRELVRQIRAASHERLVVAVDQE----GGRVQRFRDGFTRLPAAQSFAAINDAATAAQLAQEAGWLMAAEMMAMDIDISFAPVLDIGHV-SAAIGERSFHSDPQQARIMAECFIRGMHSAGMKTTGKHFPGHGAVTADSHKETPHDNRPLAEIRTHDMVIFRELIQRKLLDAIMPA 212          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_AZOSE (Beta-hexosaminidase OS=Azoarcus sp. (strain EbN1) GN=nagZ PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.331e-35
Identity = 94/205 (45.85%), Postives = 116/205 (56.59%), Query Frame = -1
Query:   25 LPQPRVGGLKSFLPANMIIRPQVHELSAAIRAVR-PDLLLAVDQERRPGAALAPRVRPACPAMRALA-----DNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFA-RLSKQLAAVMPAPRDFPTGRP 618
            L  P VGG+  F   N     Q+  L+A I A+R P L++AVD E               P+MR L      D+  A + A   G+++A E+LA G+DLSF PVLDLDY  S VVG RAF  DP   A LA + + GM  AGM   GKHFPGHG+AEADSHV IP DER  + I   D+ P+  RL +QLA VMPA   +P   P
Sbjct:   34 LLDPLVGGVILFA-RNFRDSEQLQALTAEIHALRSPALIIAVDHEGGRVQRFRTDGFTRIPSMRCLGRLWERDHVAALESARCAGYVLAAELLAHGVDLSFTPVLDLDYGCSRVVGDRAFHRDPLVVAALAQSLVSGMADAGMGCVGKHFPGHGYAEADSHVEIPVDEREFDAIWTEDIAPYRHRLGRQLAGVMPAHVIYPRVDP 237          

HSP 2 Score: 23.483 bits (49), Expect = 4.331e-35
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -2
Query:   12 HVIFPQVDPGNSG 50
            HVI+P+VDP  +G
Sbjct:  229 HVIYPRVDPNPAG 241          
BLAST of EY735394 vs. ExPASy Swiss-Prot
Match: NAGZ_PECCP (Beta-hexosaminidase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=nagZ PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.245e-35
Identity = 92/199 (46.23%), Postives = 121/199 (60.80%), Query Frame = -1
Query:   52 LLPQPRVGGLKSFLPANMIIRPQVHELSAAIRAV-RPDLLLAVDQERRPGAALAPRVR------PACPAMRALADNPNAEQLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARL--SKQLAAVMPA 621
            +L  P VGG+  F   N     Q+ EL   IRA  R  L+++VDQE         R R      PA  A  AL   P A +LAE+ GW+MA E++++ +D+SFAPVLD+ +Q SA +G R+F  +PE A  +A +FIRGM+SAGM  TGKHFPGHG   ADSH   P D R L +IRA+D++ F  L   +QL A+MPA
Sbjct:   20 VLEHPLVGGVILFT-RNFHDAAQLRELVRQIRAASRERLVVSVDQE----GGRVQRFRDGFTRLPAAQAFAALNSEPEALRLAEEGGWLMAAEMISMDIDISFAPVLDIGHQ-SAAIGERSFHANPETALAVAQSFIRGMHSAGMKVTGKHFPGHGAVSADSHKETPRDPRPLAEIRAHDMLIFKALIQRQQLDAIMPA 212          
The following BLAST results are available for this feature:
BLAST of EY735394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
NAGZ_PSEAE1.526e-7071.43Beta-hexosaminidase OS=Pseudomonas aeruginosa GN=n... [more]
NAGZ_PSEAB1.526e-7071.43Beta-hexosaminidase OS=Pseudomonas aeruginosa (str... [more]
NAGZ_PSEA81.526e-7071.43Beta-hexosaminidase OS=Pseudomonas aeruginosa (str... [more]
NAGZ_SHEFN2.516e-3746.30Beta-hexosaminidase OS=Shewanella frigidimarina (s... [more]
NAGZ_IDILO6.310e-3745.54Beta-hexosaminidase OS=Idiomarina loihiensis GN=na... [more]
NAGZ_CHRVO6.196e-3647.52Beta-hexosaminidase OS=Chromobacterium violaceum G... [more]
NAGZ_YERPY3.075e-3545.73Beta-hexosaminidase OS=Yersinia pseudotuberculosis... [more]
NAGZ_YERP33.075e-3545.73Beta-hexosaminidase OS=Yersinia pseudotuberculosis... [more]
NAGZ_AZOSE4.331e-3545.85Beta-hexosaminidase OS=Azoarcus sp. (strain EbN1) ... [more]
NAGZ_PECCP5.245e-3546.23Beta-hexosaminidase OS=Pectobacterium carotovorum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-107-C02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735394 ID=EY735394; Name=EY735394; organism=Citrus sinensis; type=EST; length=1023bp
GGGGAACCGGGTCCGGAATTTCCCGGGTCGACCTGTGGGAAAATCACGTG
GGGCCGGCATGACGGCCGCCAACTGCTTGCTCAGGCGTGCAAAAGGCACC
AGGTCATTGGCGCGAATCTGTTCCAGGCTGCGCTCATCATTGGGAATCGC
GACGTGGGAATCGGCTTCGGCCCAGCCGTGGCCGGGGAAGTGTTTGCCGG
TAGCGGCCATGCCAGCGCTGTTCATCCCGCGAATAAAGGCACCGGCAAGC
ACCGCGGCGCGCTCGGGGTCGCCTTCGAATGCGCGCGTGCCCACGACTGC
GCTGCGCTGGTAATCGAGGTCCAGCACCGGCGCGAAGCTCAGGTCCAGGC
CGACCGCCAGCACTTCTGTCGCCATGATCCAACCGCACTGCTCGGCCAGT
TGCTCGGCATTCGGGTTGTCGGCCAAGGCGCGCATCGCCGGGCAGGCCGG
ACGAACCCTTGGCGCAAGCGCGGCACCCGGCCGCCTTTCCTGATCGACCG
CTAGCAACAGGTCCGGGCGCACGGCGCGAATCGCGGCGCTTAACTCATGC
ACCTGGGGGCGGATGATCATATTTGCCGGCAAAAATGATTTCAGGCCGCC
CACCCGGGGCTGGGGCAACAAAGTTGCGGTTTTTTAGCCGCCTAGCAGGT
CCCGGCGAACGACACTCCATCAAAAAAATCCTTGCCGGGCTTGGGGGCTA
AGAATTTCCTTTAAAAACCGTCCGACCTTCTGGAGCCCCTCCAGGGAGCT
TATCTCCTGGTGTTGTAATTTGGGAAAAGGTATCCACTTAAAAATGCACT
GGGATAGGGAGTTCTATGAAGCCACGCACTCCCCAGAGCCTGTATTACTT
TAAAAAAAAAATATTGGAGCGCCCATTTCGAAAGAATGATAAGGTTTTAT
CTGAGCGTATAAGTAAGCTGATATGTCCATAACCATCGTCAAGATGAGGT
TTGTACATCATTGACAATGTATTTTATAGTGTGAGCAGCATTGTTTATTA
TTACCAAATGCGCGGCGGGAAGC
back to top