EY735185

Overview
NameEY735185
Unique NameEY735185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY735185 vs. ExPASy Swiss-Prot
Match: LTRA_KLEPN (Probable HTH-type transcriptional regulator ltrA OS=Klebsiella pneumoniae GN=ltrA PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.115e-22
Identity = 74/211 (35.07%), Postives = 101/211 (47.87%), Query Frame = 3 
Query:  258 LPLLGEMAIFVKVVETGSFSEAARQLGAXXXXXXXXXXRLEXXXXXXXXXXXXXXXXXSEGGEEVFKRCQEMVSAARSVMEISGQYTHEAEGLVRVSVPKAVGRFVVHPHMPEFLRRYPKVDVQLILEDRHG*SD**QCRSEHPHHRQPAARLGGAPINNYRKL*SCPRRITWGEQGAPKNPFILLKHICILLGENPWEMPSEIFPQGEQE 890
            L LL ++A+FV++V+ GSFS  ARQ G           RLE                 S+ GE +++  Q+M+ AAR  M+ +G     A+G + +SVPKAVGRFV+HP M  F  RYP+VDV L LEDR                  P+  L G P+   R +  C       + G P  P  L  H CI LGE P +   +   +G+ E
Sbjct:    3 LNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDVCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPLMPIRHV-ICATEAYLQQHGTPYTPQDLRAHSCISLGETPADARWKFRREGKTE 212
The following BLAST results are available for this feature:
BLAST of EY735185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LTRA_KLEPN1.115e-2235.07Probable HTH-type transcriptional regulator ltrA O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-E10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735185 ID=EY735185; Name=EY735185; organism=Citrus sinensis; type=EST; length=903bp
AATTTTTTTTTTGACGACATCTGCAGTACGGTCCGGATTCCCGGGTCGAC
TGCAGGACTACCGCAAATTGGTTATCAAAAGGTGTGCATCCCAGCACTTC
AAGTTCGGCATTCAGGTGGTCATGGGTAAAAAACAGGCGCTGGGTCATCA
TCTACATCCGCATCAGGGTTTCTATCCGGCAGTATAAGAAGTGCGCCAAT
GGGTGATAATCCGTTCAAATCTCAATGGACTTGTGCGTCATGAGCATCAA
TCTTCCCTTGCCTCTGCTCGGCGAAATGGCGATTTTCGTCAAGGTGGTGG
AAACCGGCAGCTTTTCCGAGGCCGCACGGCAATTGGGTGCATCGCCGTCC
TCTGTGAGCCGCAGCATCTCGCGCCTGGAAAAAGCCCTGGCGACCCGCCT
GCTGCAACGCACCACGCGCAAGTTGCGCCTCAGCGAAGGAGGCGAAGAGG
TGTTCAAGCGCTGCCAGGAGATGGTCAGCGCCGCGCGTTCTGTAATGGAA
ATCAGCGGGCAGTACACCCATGAAGCCGAAGGGTTGGTGCGGGTCAGCGT
GCCCAAGGCGGTGGGGCGTTTTGTGGTGCATCCCCATATGCCGGAATTTC
TGCGGCGTTATCCCAAGGTCGATGTGCAATTGATCCTTGAGGACCGGCAT
GGTTGATCTGATTGATGACAATGTCGATCTGAGCATCCCCATCACCGACA
GCCCGCCGCCAGGCTTGGTGGGGCGCCAATTAATAACTATCGAAAACTTT
GATCTTGCCCCCGCCGCATTACCTGGGGGGAACAGGGGGCCCCCAAGAAC
CCCTTTATATTGTTGAAGCACATTTGCATTTTACTTGGGGAAAACCCCTG
GGAAATGCCCTCTGAAATTTTCCCCCAAGGAGAACAAGAGGCGTGGAAGG
CTC
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