EY735169

Overview
NameEY735169
Unique NameEY735169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.899e-42
Identity = 80/100 (80.00%), Postives = 95/100 (95.00%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
            PVVDGKLSQTCYLMALD+CYK LC+K+EK+EGK+FS+++ADY +FHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK  P+S+L+ DESYQSRDLEKV
Sbjct:  202 PVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDADYIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEKV 301          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.464e-18
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 298
            P VDGKLS +CY  A+D CY      +EK  GK FSL   D+ +FHSPYNKLVQKSF R+L+NDF+ N +    A+ E    +  +  +++Y    LEK
Sbjct:  204 PRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQVDFALFHSPYNKLVQKSFGRMLYNDFLNNPNDSRYASLE---AYKNVKPEDTYFDSVLEK 299          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCSB_DICDI (Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.564e-18
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKL-EGKQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLS-GDESYQSRDLEKVCFEP*LQLFK 331
            P VDGKLS  CYL ALD CY     K+E + +  +FS+ + DY  FHSPYN+LVQKS+ARL++NDF++N ++      + L PF  LS G +SY +  L+++  +  L  FK
Sbjct:  204 PYVDGKLSIECYLRALDKCYLEYKKKFESINDDNKFSMDSFDYVCFHSPYNRLVQKSYARLIYNDFLQNPNN---PKYQDLLPFKDLSTGKDSYINSKLDQITLKLSLDDFK 312          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS2_BLAGE (Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella germanica GN=HMGCS-2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.267e-18
Identity = 53/117 (45.30%), Postives = 66/117 (56.41%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKL------EGKQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVCFEP*LQLFKK 334
            PVVDGKLS  CYL ALD CY   CSK EK       E  +  L   D F+FHSPY KLVQKS ARL+ NDF++      +     L     L  +++Y  RD+EK+  +   QLF+K
Sbjct:  204 PVVDGKLSVQCYLSALDHCYPRFCSKTEKYLKRCGKENTKIDLDYFDAFVFHSPYCKLVQKSVARLVLNDFIQYPEKYQD-----LQQLRNLKFEDTYFDRDIEKIFMDKSKQLFEK 315          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.619e-17
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 298
            P VDGKLS  CYL ALD CY+  CSK +K  G++F +   D  +FH+PY KLVQKS ARL+ NDF+R +          L     +  +++Y  R++EK
Sbjct:  201 PTVDGKLSIQCYLSALDHCYQLYCSKIQKQLGEKFDIERLDAVLFHAPYCKLVQKSLARLVLNDFVRASEEERTTKYSSLEALKGVKLEDTYFDREVEK 299          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVCFEP*LQLFKK 334
            P+VDGKLS  CYL ALD CY   C K     + EG  K F+L++  + +FHSPY KLVQKS AR+L NDF+ + +    +    L  F  +  +++Y  RD+EK   +   +LF +
Sbjct:  214 PIVDGKLSIQCYLSALDRCYSVYCKKIRAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQ 329          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVCFEP*LQLFKK 334
            P+VDGKLS  CYL ALD CY   C K     + EG  K F+L++  + +FHSPY KLVQKS AR+L NDF+ + +    +    L  F  +  +++Y  RD+EK   +   +LF +
Sbjct:  214 PIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQ 329          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVCFEP*LQLFKK 334
            P+VDGKLS  CYL ALD CY     K +         + F+L +  Y +FH+P+ K+VQKS ARL+FNDF+ ++S       + L  F  L  +E+Y ++D++K   +  L +F K
Sbjct:  251 PLVDGKLSIQCYLRALDRCYAAYRRKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFKGLKLEETYTNKDVDKALLKASLDMFNK 366          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ------FSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVCFEP*LQLFKK 334
            P+VDGKLS  CYL ALD CY     K EK + KQ      F+L +  Y +FH+P+ KLVQKS ARL+FNDF+  +        + L  F  L  +++Y ++D++K   +  L +F K
Sbjct:  251 PLVDGKLSIQCYLRALDKCYAFYRQKIEK-QWKQAGIDRPFTLDDVQYMIFHTPFCKLVQKSLARLMFNDFLLASGDTQTGIYKGLEAFRGLKLEDTYTNKDVDKAFLKASLNMFNK 366          
BLAST of EY735169 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.338e-16
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 PVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQFSLSNADYFMFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVCFEP*LQLFKK 334
            P+VDGKLS  CYL ALD CY     K +         + F+L +  Y +FH+P+ K+VQKS ARL+FNDF+ ++S       + L  F  L  +E+Y ++D++K   +  L +F +
Sbjct:  251 PLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETYTNKDVDKALLKASLDMFNQ 366          
The following BLAST results are available for this feature:
BLAST of EY735169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HMCS_ARATH1.899e-4280.00Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
HMCSA_DICDI1.464e-1846.46Hydroxymethylglutaryl-CoA synthase A OS=Dictyostel... [more]
HMCSB_DICDI5.564e-1845.54Hydroxymethylglutaryl-CoA synthase B OS=Dictyostel... [more]
HMCS2_BLAGE7.267e-1845.30Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella ... [more]
HMCS1_BLAGE1.619e-1744.44Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella ... [more]
HMCS1_PONAB4.710e-1741.38Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_HUMAN4.710e-1741.38Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS2_RAT8.035e-1738.79Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_BOVIN1.370e-1641.03Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_MOUSE2.338e-1637.93Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-C10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735169 ID=EY735169; Name=EY735169; organism=Citrus sinensis; type=EST; length=829bp
TCCGGTTGTTGATGGGAAACTTTCTCAGACATGCTACCTCATGGCTCTTG
ATACTTGTTACAAATGTTTATGCAGCAAGTACGAGAAACTGGAGGGAAAA
CAATTTTCTCTTTCTAATGCTGATTATTTCATGTTCCATTCTCCATATAA
CAAGCTTGTACAGAAAAGCTTTGCTCGTTTGTTATTCAATGACTTTATGA
GGAATGCCAGTTCTGTCGACGAGGCTGCCAAAGAAAAGCTGGGACCATTT
TCAACCTTGTCTGGTGATGAAAGCTACCAAAGCCGGGATCTTGAGAAGGT
CTGTTTTGAACCTTAATTGCAATTGTTTAAGAAATACGATTCTGAATTTC
TTTCACGACCTTCATCTTTTCCTGTGGGAGGATTGAGATTGATGATTGTA
ATGTCTGACCCCATTGACATAATAATGACGATTCATCACCTTCTTCAGGG
CCTGAATGATGTTGACTTTCTGGATTCTTAATGTTGGTAACTCTTATTTT
TTAATATACTCCACGGGATTTATTTCCCCAAATTGGTCCCTCCATGCGGC
TGGAAAATTTTCCTTCTAATACACTCCTGCCTTAATTTGATTCAACAATC
ATAATGACTCTACCACGAACTAATCAAAGCTAAACGGATCATCTGTAAAG
GAAGGATTTCAATCAGATATACACGAGCGAGCCGCATCAATACCACAGTG
ACATATAATGTCAGATCGAATATACCTAAGCTCAACCCCCCACACCACCC
CACCCCTCCACCCTACGTGCGCTCAACAGAGATGAGTATACTCACCTCTC
TCACTCCCAACTTCAACTCACACAATCTA
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