EY735141

Overview
NameEY735141
Unique NameEY735141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1012
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735141_ssr657 microsatellite EY735141_ssr657:657..668. BLAST: Citrus ESTs to Prunus persica proteins V1
EY735141_ssr678 microsatellite EY735141_ssr678:678..689. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.234e-29
Identity = 73/109 (66.97%), Postives = 82/109 (75.23%), Query Frame = 2
Query:  257 MAEAPTSPAGG--SHESGGERRPHAGG-VREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            MAEAP SP GG  SHESG  R    GG VRE+DR+LP ANISRIMKKA+P NGKIAKD K+TVQE  +E    +TSEASDK Q+EKRKTI G DLL AMATL  E ++E
Sbjct:    1 MAEAPASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIE 109          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.359e-27
Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  257 MAEAPTSPAGGSHESGGERRPHAGGVREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            MA+ P+SPAG   ESGG        VRE+DRYLP ANISRIMKKA+P NGKI KD KDTVQE  +E    +TSEASDK QKEKRKT+ G DLL AMATL  E ++E
Sbjct:    1 MADTPSSPAGDGGESGGS-------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLE 99          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.318e-27
Identity = 71/116 (61.21%), Postives = 81/116 (69.83%), Query Frame = 2
Query:  257 MAEAPTSPAGG--SHESGGERRPHAGG--------VREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            MA+ P SP GG  SHESG  R    GG        VRE+DR+LP ANISRIMKKA+P NGKIAKD K+TVQE  +E    +TSEASDK Q+EKRKTI G DLL AMATL  E ++E
Sbjct:    1 MADGPGSPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIE 116          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.807e-27
Identity = 65/107 (60.75%), Postives = 81/107 (75.70%), Query Frame = 2
Query:  257 MAEAPTSPAGG-SHESGGERRPHAGGVREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            MAE+ T   GG SHESGG++ P +  VRE+DR+LP ANISRIMK+ +P NGKIAKD K+T+QE  +E    +TSEASDK Q+EKRKTI G DLL AMATL  E +++
Sbjct:    1 MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 107          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.807e-27
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = 2
Query:  257 MAEAPT-SPAG-GSHESGGERRPHAGGVREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            MAE+   SP G GSHESGG++ P +  VRE+DR+LP ANISRIMK+ +P NGKIAKD K+ VQE  +E    +TSEASDK Q+EKRKTI G DLL AMATL  E +ME
Sbjct:    1 MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYME 108          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.311e-25
Identity = 62/104 (59.62%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  263 EAPTSPAGGSHESGGERRPHAGGVREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            E     A   H+  G   P +GGVRE+DR+LP ANISRIMKKAVP NGKIAKD K+T+QE  +E    +TSEASDK QKEKRKTI G DLL AM TL  E++++
Sbjct:   10 EGGAGMADAGHDESGSP-PRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVD 112          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.482e-21
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  281 AGGSHESGGERRPHAGGVREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            A   ++SGG +       RE+DR+LP AN+SRIMKKA+P N KI+KD K+TVQE  +E    +T EASDK Q+EKRKTI G DLL AM TL  E ++E
Sbjct:    2 ADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVE 99          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.584e-20
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  284 GGS--HESGGERRPHAG-GVREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            GGS  + SGG    +   G RE+DRYLP ANI RIMKKA+P+N K+AKD K+TVQ+  +E    +TSEASDK Q+EKRKTI G D++ AM +L  E ++E
Sbjct:   27 GGSSNNNSGGNANNNNNEGDREQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVE 126          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.584e-20
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  281 AGGSHESGGERRPHAGGVREEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            +GG      +    +   RE+DR+LP AN+SRIMKKA+P N KI+KD K+T+QE  +E    +T EASDK QKEKRKTI G DLL AM TL  E ++E
Sbjct:    8 SGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVE 105          
BLAST of EY735141 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.779e-19
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  287 GSHESGGERRPHAGGV-REEDRYLPRANISRIMKKAVPDNGKIAKDGKDTVQEWDAEGSRCMTSEASDKGQKEKRKTITGHDLLRAMATLAVEQWME 574
            G+   GG      GGV +E+DR+LP ANI RIM++AVP+NGKIAKD K++VQE  +E    +TSEASDK  KEKRKTI G DL+ +M TL  E ++E
Sbjct:    7 GTENGGGGG---GGGVGKEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVE 100          
The following BLAST results are available for this feature:
BLAST of EY735141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NFYB_MAIZE3.234e-2966.97Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB1_ARATH1.359e-2764.15Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB3_ORYSJ2.318e-2761.21Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYBA_ARATH8.807e-2760.75Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH8.807e-2762.96Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB2_ORYSJ6.311e-2559.62Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB3_ARATH2.482e-2155.10Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB_DICDI3.584e-2055.00Nuclear transcription factor Y subunit beta OS=Dic... [more]
NFYB2_ARATH3.584e-2053.06Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB4_ORYSJ1.779e-1955.67Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-082-H09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735141 ID=EY735141; Name=EY735141; organism=Citrus sinensis; type=EST; length=1012bp
AAAGAAGGGAAGGGGGAAGGGGGANCTTATTTTNTCTTTCCCGGGGGGGC
NCCCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAGAGCC
ACGCGGTCCGGCAAGATCAGAGGATCCCCTTAAACCAGGAGAAAAACTAT
TAGAAATAAGCAAGTCATAATTGATAACCAATCGCCACCTCCCTCTCGCC
CCTTCTCCAAACTCGCGCGCAAAATACAAAAACTCTGGGGAGTTTATTGG
GCGGAGATGGCGGAAGCACCGACGAGCCCGGCGGGAGGTAGCCACGAGAG
CGGGGGAGAGCGGAGGCCGCACGCTGGGGGAGTGAGAGAGGAGGACAGGT
ATTTGCCAAGAGCTAACATTAGCAGGATCATGAAGAAGGCTGTGCCTGAT
AATGGCAAGATCGCTAAGGATGGTAAGGATACTGTACAGGAATGGGACGC
TGAGGGGAGCAGGTGCATGACCAGCGAGGCGAGTGATAAGGGCCAGAAGG
AGAAGAGGAAGACGATTACTGGGCATGACTTGCTCAGGGCAATGGCAACG
CTGGCGGTTGAACAGTGGATGGAGCGCGCGTGAGCGGAAACCGGAAGAGG
AAAAAGAACACCGAGGGCGACCCCCAAGGAGCGGGGACGGGAGGGGGAAG
GGGAAGGGGAGGGAGGGAGGGGAGCGAGGGCGGGCGGGCAGGCAGCCAGG
GGGGAAGCGGGAGGCGAGCGGGCGCATAACAGGCCAAGCGAGCCGGGGGG
GCGGGCGCCGGGGGGGCTGAGCCGGAGGCGCCGGGTGGAGCGGGGGGGGA
GACGGAGAGCGGAGAGCAGAGGGGGACGACGACAGAGGCCCGATGCGGCG
CAGGACAGAAGGGGAGGAAGAGACGGCGACCGGGCGGAGAGCAATGTACA
GCCAAGGCGCGGACCGCGACCAGAGTCGGCGCGGGCGGAGGGGGGATAGG
GAGGAAGGCAGGGGGGGGGGGGAGGCTAAGAATGGGAGGCGGGAGGAGGG
GACCACAGGTGG
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