EY735094

Overview
NameEY735094
Unique NameEY735094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1015
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735094 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 1.008e-38
Identity = 86/143 (60.14%), Postives = 111/143 (77.62%), Query Frame = 1
Query:  100 DGDXTRKKIFRDQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVXXXXXXXXXXXX----GKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLQTEELGISIVEDLNQQRETLLNSRNKV 516
            +G+  + KI   +SG+D+AD LIRKMDLEARSLQP+ KA+ L+KLREYKSDLN+LK+EFKRV                G AD + VS +QR RLAMSVER++QS +RIRESRR+ML+TEE+GISIV+DL+QQR+TLL++ NK+
Sbjct:   31 NGEEKKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKL 173          
BLAST of EY735094 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 4.243e-29
Identity = 65/139 (46.76%), Postives = 96/139 (69.06%), Query Frame = 1
Query:  100 DGDXTRKKIFRDQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV----XXXXXXXXXXXXGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLQTEELGISIVEDLNQQRETLLNS 504
            DG+  ++K+   +SGL++A+ LIRKMDLEAR+L PN+K+ LL KLRE+KSDLN  K E KR+                G AD    S +QR RL MS ER+ ++ +R+++SRR M++TEE+G+SI++DL+ QR++LL +
Sbjct:   30 DGEQKKQKLSEIKSGLENAEVLIRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRA 168          
BLAST of EY735094 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.691e-28
Identity = 64/139 (46.04%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  100 DGDXTRKKIFRDQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV----XXXXXXXXXXXXGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLQTEELGISIVEDLNQQRETLLNS 504
            DG+  ++ +   +SG+++A+AL++KMDLEAR+L PNVK+ LL KLREYKSDLN  K E KR+                G AD    S +QR RL MS + + ++ +RI++SRR +L+TEELG+SI++DL+ QR++LL +
Sbjct:   30 DGEQKKQNLSEIKSGVEEAEALVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRA 168          
BLAST of EY735094 vs. ExPASy Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.990e-11
Identity = 39/141 (27.66%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   94 PPDGDXTRKKIFRDQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVXXXXXXXXXXXXGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLQTEELGISIVEDLNQQRETLLNSRNKV 516
            PPD    ++ +   +  L++A  L+ +MDLE R + P  + M   ++R YK ++ KL+ +FKR                D N  S  QR  L  + ER+ +S  R+    ++ ++TE++G  ++E+L+  RE +  +R ++
Sbjct:   30 PPD--EKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDDGN-SSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERL 167          
BLAST of EY735094 vs. ExPASy Swiss-Prot
Match: VTI1A_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.805e-11
Identity = 38/141 (26.95%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   94 PPDGDXTRKKIFRDQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVXXXXXXXXXXXXGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLQTEELGISIVEDLNQQRETLLNSRNKV 516
            PPD    ++ +   +  L++A  L+ +MDLE R + P  + M   ++R YK ++ KL+ +FKR                D    S  QR  L  + ER+ +S  R+    ++ ++TE++G  ++E+L+  RE +  +R+++
Sbjct:   30 PPD--EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNEL-LGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRL 167          
The following BLAST results are available for this feature:
BLAST of EY735094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VTI12_ARATH1.008e-3860.14Vesicle transport v-SNARE 12 OS=Arabidopsis thalia... [more]
VTI11_ARATH4.243e-2946.76Vesicle transport v-SNARE 11 OS=Arabidopsis thalia... [more]
VTI13_ARATH4.691e-2846.04Vesicle transport v-SNARE 13 OS=Arabidopsis thalia... [more]
VTI1A_HUMAN3.990e-1127.66Vesicle transport through interaction with t-SNARE... [more]
VTI1A_MOUSE6.805e-1126.95Vesicle transport through interaction with t-SNARE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-082-C08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735094 ID=EY735094; Name=EY735094; organism=Citrus sinensis; type=EST; length=1015bp
ANGTGGGGGGGGGGGGGGTGGTTTTAAANACTCGCATCCGCCTCNAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCGACCCAGCGTCCGCCAG
ATGGAGATNTCACAAGAAAGAAAATATTCCGAGATCAATCTGGACTGGAT
GACGCTGACGCTTTGATTCGTAAAATGGATTTGGAGGCAAGAAGTTTGCA
GCCGAATGTAAAGGCTATGCTGCTTGCTAAATTAAGAGAATACAAGTCAG
ATTTGAATAAGTTGAAGAGAGAGTTTAAAAGAGTTTCGTCATCCGAAGCT
CACGAAGAGTTGCTGGAGTCTGGAAAAGCCGATCCAAATGTGGTTTCTGG
GGAGCAGAGAGAAAGATTGGCCATGTCAGTTGAGAGAATAAATCAGTCGG
GTGAAAGAATTAGGGAGAGTAGAAGAGTCATGCTACAGACAGAGGAGCTT
GGTATCTCAATTGTGGAAGATCTGAATCAACAGCGTGAAACTCTGTTAAA
TTCTCGTAACAAGGTATTCTTGCTTGGTTGACTTTTCTTTTTGGGTCATA
TGCATTCTTAGAGGAGTTTGAGTTACTCCTACACTCATGATGACCATTGG
GAGGCAATGTATGAGCCTCAATTGGTTTCATTGATAGAATTTGGAAACCT
TTATTTGCAACCCCTTCTTACAGAGGAACCCGAGCGCTCCTGCCTGTGAT
AAATGCCGGCAAAAGGTGGCGGCGTCCGCTCGAACACACGAATTTAATTA
TCGGGCGAACAGGTTCCTTCTCTGGGTAACCTTCACAGGCGGGGAATGAC
GGCCCTCACCAAAAAAGAACCAAGCGCTCACCCTCCCAGTTCCCCCCAGG
CAGTGCCCCCCAACCGAGGGGATCCCCTCCCTCCATACAATCGGTCGCCC
TCGGGCGTCCCCTGAGCTCCGCTCGCTCCCGTCGCTTGAGTGGCGCGGGA
CGCGCCCCAGAACCCTACAACAAGCGCCCAAACACGCGCACGACGCGCCC
CCCCCGCGTCCGGAT
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