EY734955

Overview
NameEY734955
Unique NameEY734955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP2_PONAB (Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.036e-38
Identity = 78/176 (44.32%), Postives = 118/176 (67.05%), Query Frame = 3
Query:  189 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLE-QPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAW 713
            Y+E ++ A+ +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+A EEL K +++IT  +L++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K        +   ++++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+ KHVER L   W
Sbjct:  484 YVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAHADPTELTLSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVW 659          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP2_HUMAN (Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.036e-38
Identity = 78/176 (44.32%), Postives = 118/176 (67.05%), Query Frame = 3
Query:  189 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLE-QPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAW 713
            Y+E ++ A+ +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+A EEL K +++IT  +L++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K        +   ++++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+ KHVER L   W
Sbjct:  484 YVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAHADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVW 659          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP2_MOUSE (Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.765e-38
Identity = 79/180 (43.89%), Postives = 120/180 (66.67%), Query Frame = 3
Query:  189 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIK-----TSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAW 713
            Y+E ++ A+ +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+  EEL K +++I + +L++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K     T +D  +L    +++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+ KHVER L   W
Sbjct:  484 YVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVW 659          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP2_DROME (Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.614e-31
Identity = 73/193 (37.82%), Postives = 118/193 (61.14%), Query Frame = 3
Query:  138 VPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQ 716
            +PT E +      S  H +  +  AY FA+  LL+++    DLMG L+S+KRYLLL+QGDF + FMD   +EL K +D +    L++LL + LR ++A  DP  +DL C +    L+ +M+     +I    ++   +  + ++GLE F+ +Y+V+WP S+V++  +++KYQM+FR LF+ KHVER L   W+
Sbjct:  457 MPTQEMNLEFDPTSERH-VSVINDAYYFAARMLLDVLLTENDLMGHLQSVKRYLLLNQGDFTMQFMDACEDELTKNVDHVLPMTLENLLGLTLRISSARNDPYKDDLHCELLPYDLVTQMS-----KIMKKEENWQAQPRLDLSGLECFAFTYEVKWPCSLVLNHISISKYQMLFRQLFYCKHVERQLCKIWK 643          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: SPC97_DICDI (Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 9.791e-29
Identity = 78/236 (33.05%), Postives = 124/236 (52.54%), Query Frame = 3
Query:  138 VPTSENSKLLSFGSNHH-YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVE---------------------IKTSSDSVDLEQPVSIT-----------------GLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQVHQ 725
            +PT+    ++ +  N + Y++ ++ AY++ASG LLNL+     L+ +L++IK Y LL +GDF  HFMD   +EL K LD+I + K+ SLL ++LR S+ +  D   +DL C      L+ ++  +  +                        TSS++  +   V+ T                 G+E+ + +Y V WPLS++ISRK+L KYQ++FR LF  KHVE+ L   W  HQ
Sbjct:  736 IPTT----IIEYSKNENVYIDKIEKAYDYASGILLNLLINERHLISRLKAIKHYFLLCKGDFFSHFMDTTYDELKKPLDQINMVKMNSLLQLSLRTSSISEEDEFKDDLECEFIPYKLVDQLLNIININNFNNPTTTTTTNTSSNNITATTNTSSNNTTINTTVNTTLIQSTSAHEVLKTNKLFGIESLAFNYNVGWPLSLIISRKSLIKYQIIFRHLFLCKHVEKVLVDTWSQHQ 967          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: ALP4_SCHPO (Spindle pole body component alp4 OS=Schizosaccharomyces pombe GN=alp4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.259e-24
Identity = 75/212 (35.38%), Postives = 106/212 (50.00%), Query Frame = 3
Query:  210 AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR--STAAAADPCHEDLTCSVERSSL---LKRMATLKGVEIKTSS-------DSVDLEQPV-------------------------SITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQVHQGSS 734
            AY +A+  LL L++    L   L S+K Y  LDQ DF   F+D A+ EL K    I++ KLQS LD+ALR   T  A DP  E +T  V ++SL   L  + ++ G+E  TSS       +S+  +  V                          I G ET  L YKV +PLS+++SRKA+ +YQ++FR     +HVE  L  +W  H  +S
Sbjct:  405 AYVYANESLLQLLQSSQSLYAHLYSLKHYFFLDQSDFFTTFLDNAQHELRKPAKYISITKLQSQLDLALRQPGTITATDPHKEYVTVEVNQTSLIDWLMHIVSISGLEEGTSSQGNEVWNESITKQADVGNETRNFESEHNRSTQGTSKVGSDKDINGFETMQLCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNS 616          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP3_XENLA (Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 55/182 (30.22%), Postives = 92/182 (50.55%), Query Frame = 3
Query:  201 VKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQVHQGSSCLLR 746
            +  AY   S  LL+++ + Y+L+  +++++RYLLL QGDF+ H MD+ + EL++    +    L  +L+ A+R+T A  D              +LKR+            D   LE     TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L   W+ H  ++ LL+
Sbjct:  533 IDAAYFDTSKYLLDVLNKNYNLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFD-----------NPEILKRL------------DVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIWKGHMCNAKLLK 691          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: SPC98_DICDI (Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 52/197 (26.40%), Postives = 95/197 (48.22%), Query Frame = 3
Query:  150 ENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQVHQGSSCL 740
            E +K L++ +     E +++    +S  LL ++  R+  M  ++++K+YLLL QGDF+ + MD+  E+L+K   +I   KL   +D A+R++ A             E   ++ R+            D   L +     G + FSL Y V  PL+ ++S   + +Y+ +F  ++  K VE  L   W+  + S+ L
Sbjct:  459 EKTKELNYINKEVLQEIIELVSRQSSERLLKIVLNRFKFMNHVKALKKYLLLGQGDFIQYLMDLIGEDLLKPTSQIQRHKLVGWMDTAIRNSNA-----------QFEEQDIVNRL------------DIALLPERPGNIGWDIFSLDYHVDTPLNTILSPNDILRYKKIFHFMWGIKRVEYSLASIWRKIRSSTSL 632          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP3_MOUSE (Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 55/182 (30.22%), Postives = 91/182 (50.00%), Query Frame = 3
Query:  201 VKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQVHQGSSCLLR 746
            +  AY   S  LL+++ ++Y L+  +++++RYLLL QGDF+ H MD+ + EL++    +    L  +L+ A+R+T A  D              +LKR+            D   LE     TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L    + H  ++ LLR
Sbjct:  532 IDAAYFETSKYLLDVLNKKYSLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFD-----------SPEILKRL------------DVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLR 690          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP3_HUMAN (Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.051e-14
Identity = 54/182 (29.67%), Postives = 91/182 (50.00%), Query Frame = 3
Query:  201 VKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQVHQGSSCLLR 746
            +  AY   S  LL+++ ++Y L+  +++++RYLLL QGDF+ H MD+ + EL++    +    L  +L+ A+R+T A  D              +L+R+            D   LE     TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L    + H  ++ LLR
Sbjct:  534 IDAAYFETSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFD-----------SPEILRRL------------DVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLR 692          
The following BLAST results are available for this feature:
BLAST of EY734955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GCP2_PONAB3.036e-3844.32Gamma-tubulin complex component 2 OS=Pongo abelii ... [more]
GCP2_HUMAN3.036e-3844.32Gamma-tubulin complex component 2 OS=Homo sapiens ... [more]
GCP2_MOUSE6.765e-3843.89Gamma-tubulin complex component 2 OS=Mus musculus ... [more]
GCP2_DROME1.614e-3137.82Gamma-tubulin complex component 2 homolog OS=Droso... [more]
SPC97_DICDI9.791e-2933.05Spindle pole body component 97 OS=Dictyostelium di... [more]
ALP4_SCHPO3.259e-2435.38Spindle pole body component alp4 OS=Schizosaccharo... [more]
GCP3_XENLA3.267e-1630.22Gamma-tubulin complex component 3 homolog OS=Xenop... [more]
SPC98_DICDI6.161e-1526.40Spindle pole body component 98 OS=Dictyostelium di... [more]
GCP3_MOUSE6.161e-1530.22Gamma-tubulin complex component 3 OS=Mus musculus ... [more]
GCP3_HUMAN1.051e-1429.67Gamma-tubulin complex component 3 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-108-E05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734955 ID=EY734955; Name=EY734955; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGCAGTGCTCAGGTTTTGTTTCTACCCACTATTCAATGTTA
CCGTGTTGCTTTCACAAAGGATTGTTTTTGTTCTCCTTTTCTCCTTGTGA
TTGCATTAGTACTTGTTGATGGGAGCATTATTGATAGGTCCCTACTTCAG
AGAATTCAAAGTTATTGAGTTTTGGCTCTAACCATCATTATCTGGAGTGT
GTAAAAGTTGCATATGAATTTGCCAGTGGTGAGCTCTTAAATCTTATCAA
AGAAAGGTATGATCTAATGGGAAAGCTACGGTCTATAAAGCGTTATCTAC
TTCTCGATCAGGGTGATTTTTTGGTTCATTTTATGGATATAGCTCGTGAG
GAACTCATGAAACAGCTTGATGAGATTACTGTGGAAAAACTGCAGTCTCT
GCTAGACATTGCTCTGCGTTCCACTGCTGCAGCAGCAGATCCTTGTCATG
AGGACCTAACATGTTCTGTCGAGAGATCATCCTTGCTTAAAAGAATGGCC
ACACTCAAAGGTGTTGAAATTAAGACTTCCTCTGATAGCGTGGATTTAGA
GCAGCCAGTGAGCATTACTGGTCTTGAGACGTTTTCTTTAAGCTACAAGG
TCCAGTGGCCATTATCTATTGTTATATCAAGAAAAGCCCTAACCAAGTAT
CAGATGGTGTTTCGCTTACTTTTTCACTGGAAACATGTAGAGCGCCCCCT
GTGGGGGGCTTGGCAAGTGCACCAAGGAAGCTCGTGCCTTTTACGCAAAG
GGAACTGCTAATCTCTAAATCATCTCTGCTCCGCGGCAGCAAGCTTAAGG
TTATTAATAGCCCTTCTTCATTATTTGACATTTTGAAATTCTTGGAACCA
ATTGGCATGGGAAGGCGTAAA
back to top