EY734948

Overview
NameEY734948
Unique NameEY734948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734948 vs. ExPASy Swiss-Prot
Match: GCP2_PONAB (Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 46/103 (44.66%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  189 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLACSVEKSSLVGRM 497
            Y+E ++ A+ +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+A EEL K +++IT  +L++LL++ALR + A  DP  +DL   +    L+ ++
Sbjct:  484 YVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQL 586          
BLAST of EY734948 vs. ExPASy Swiss-Prot
Match: GCP2_HUMAN (Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 46/103 (44.66%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  189 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLACSVEKSSLVGRM 497
            Y+E ++ A+ +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+A EEL K +++IT  +L++LL++ALR + A  DP  +DL   +    L+ ++
Sbjct:  484 YVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQL 586          
BLAST of EY734948 vs. ExPASy Swiss-Prot
Match: GCP2_MOUSE (Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 44/103 (42.72%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  189 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLACSVEKSSLVGRM 497
            Y+E ++ A+ +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+  EEL K +++I + +L++LL++ALR + A  DP  +DL   +    L+ ++
Sbjct:  484 YVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLKIELMPHDLITQL 586          
BLAST of EY734948 vs. ExPASy Swiss-Prot
Match: GCP2_DROME (Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.563e-16
Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  138 VPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLACSVEKSSLVGRMGTV 506
            +PT E +      S  H +  +  AY FA+  LL+++    DLMG L+S+KRYLLL+QGDF + FMD   +EL K +D +    L++LL + LR ++A  DP  +DL C +    LV +M  +
Sbjct:  457 MPTQEMNLEFDPTSERH-VSVINDAYYFAARMLLDVLLTENDLMGHLQSVKRYLLLNQGDFTMQFMDACEDELTKNVDHVLPMTLENLLGLTLRISSARNDPYKDDLHCELLPYDLVTQMSKI 578          
BLAST of EY734948 vs. ExPASy Swiss-Prot
Match: SPC97_DICDI (Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  138 VPTSENSKLLSFGSNHH-YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLACSVEKSSLVGRM 497
            +PT+    ++ +  N + Y++ ++ AY++ASG LLNL+     L+ +L++IK Y LL +GDF  HFMD   +EL K LD+I + K+ SLL ++LR S+ +  D   +DL C      LV ++
Sbjct:  736 IPTT----IIEYSKNENVYIDKIEKAYDYASGILLNLLINERHLISRLKAIKHYFLLCKGDFFSHFMDTTYDELKKPLDQINMVKMNSLLQLSLRTSSISEEDEFKDDLECEFIPYKLVDQL 853          
BLAST of EY734948 vs. ExPASy Swiss-Prot
Match: ALP4_SCHPO (Spindle pole body component alp4 OS=Schizosaccharomyces pombe GN=alp4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  210 AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR--STAAAADPCHEDLACSVEKSSLV 488
            AY +A+  LL L++    L   L S+K Y  LDQ DF   F+D A+ EL K    I++ KLQS LD+ALR   T  A DP  E +   V ++SL+
Sbjct:  405 AYVYANESLLQLLQSSQSLYAHLYSLKHYFFLDQSDFFTTFLDNAQHELRKPAKYISITKLQSQLDLALRQPGTITATDPHKEYVTVEVNQTSLI 499          
The following BLAST results are available for this feature:
BLAST of EY734948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GCP2_PONAB1.973e-1944.66Gamma-tubulin complex component 2 OS=Pongo abelii ... [more]
GCP2_HUMAN1.973e-1944.66Gamma-tubulin complex component 2 OS=Homo sapiens ... [more]
GCP2_MOUSE1.279e-1842.72Gamma-tubulin complex component 2 OS=Mus musculus ... [more]
GCP2_DROME1.563e-1639.02Gamma-tubulin complex component 2 homolog OS=Droso... [more]
SPC97_DICDI1.728e-1537.70Spindle pole body component 97 OS=Dictyostelium di... [more]
ALP4_SCHPO1.514e-1142.11Spindle pole body component alp4 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-108-D05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734948 ID=EY734948; Name=EY734948; organism=Citrus sinensis; type=EST; length=765bp
CCACGCGTCCGCAGTGCTCTTGCTTTGTTTCTACCCACTATTCAATGTTA
CCGTGTTGCTTTCACAAAGGATTGTTTTTGTTCTCCTTTTCTCCTTGTGA
TTGCATTAGTACTTGTTGATGGGAGCATTATTGATAGGTCCCTACTTCAG
AGAATTCAAAGTTATTGAGTTTTGGCTCTAACCATCATTATCTGGAGTGT
GTAAAAGTTGCATATGAATTTGCCAGTGGTGAGCTCTTAAATCTTATCAA
AGAAAGGTATGATCTAATGGGAAAGCTACGGTCTATAAAGCGTTATCTAC
TTCTCGATCAGGGTGATTTTTTGGTTCATTTTATGGATATAGCTCGTGAG
GAACTCATGAAACAGCTTGATGAGATTACTGTGGAAAAACTGCAGTCTCT
GCTAGACATTGCTCTGCGTTCCACTGCTGCAGCGGCCGATCCTTGTCATG
AGGACCTAGCATGTTCTGTCGAAAAATCATCCTTGGTTGGGAGAATGGGC
ACGGTGGAAGGTGGTGGGATTGGGACCTCCCCCTGACGAGGGGCGACTAG
AACCGCCGGGGGAGTATGACTGGCGTCCGACACGGTTTTCGGCCCCGGGG
CAGGGGACGACGGGAGCATTGGCAGTGGGGGCCGCCGCGGGGGGCGAGCC
GAGCAGAAGTAGAAAAAGGGTGGGCGCGAGGAGAGCGAGCCGCCGGACGG
GCGGTGAGAAGGAAGCCGCACGAGCCGAGAGAGACGTAGTGCGGCCCGGG
CGGGGGCGCAGGGAC
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