EY734946 | Citrus Genome Database

Overview


Name	EY734946
Unique Name	EY734946
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	917

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY734946_ssr452	microsatellite	EY734946_ssr452:452..463.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of EY734946 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 6.271e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:    6 RPITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 203
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY734946 vs. ExPASy Swiss-Prot

BLAST of EY734946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
UBIQ_WHEAT	1.180e-35	100.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	1.180e-35	100.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	1.180e-35	100.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	1.180e-35	100.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	1.180e-35	100.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	1.180e-35	100.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	1.180e-35	100.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	1.180e-35	100.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	1.180e-35	100.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	1.180e-35	100.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-108-D02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY734946 ID=EY734946; Name=EY734946; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGATTACTCTTGAGGTTGAAAGTTCTGACACCATTGACAAC
GTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGCAGAG
GCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACT
ATAACATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGT
GGTATGCAGATTTTTGTGAAGACACTCACTGGGAAAACCATCACGTTGGA
GGTTGAGAGTTCGGACACAATTGACAATGTGAAGGCTAAGATCCAGGATA
AGGAGGGGATTCCCCCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAA
CTTGAGGATGGAAGGACTCTTGCTGATTACAACATCCAGAAGGAGTCCAC
TCTGCATCTTGTGCTCCGACTCCGTGGAGGTTTCTGAGTTTGGTCATCTG
GGTGTGTGTGTGTCTTATTTGCTTCGGTTTGTCTTGGTTAATGTTTGCTG
GCTATTGGTGAAATAGCTTANATAACTATTTGAAGTTTATTTTGGTTTGT
GGTAGTTGAACTCTGTTTCTAAGATATTGATATGGGCCCACTAACGTCCC
ATTATTATATCTTAGAATCTTTTTCCTGGAAAAATACGTGGTTAATGGGC
GAGACTTAAAGAAAAAAACAAAAAAAAAGGGGCGGCCGCTCTGAAAGATC
CCAGGCTTACTAACGCGGGGAGGGCACGGCATAAGCTCCTCATGAGGGGG
CCCCTAAATACAATTTCGCTGGGCCGCCGGTTTAAAAGCTACCGGAACTG
GGAAAAACCCTCGGCGGTGGCGCGAGGTAAAACGCGGTTGGCAAGAGGAC
CCCGCCTTTCCGCCGAGGCGGGCGGAGAAAAGGGAAGAGGAGGGCCCGAC
GGGGGGTGCCGCCTTCC