EY734712 | Citrus Genome Database

Overview


Name	EY734712
Unique Name	EY734712
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	899

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.155e-18
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGP 553
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHW A IMGP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40

HSP 2 Score: 31.5722 bits (70), Expect = 1.155e-18
Identity = 23/60 (38.33%), Postives = 28/60 (46.67%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV FRTKVF P     G  C  D L++  +   TI + L  I +  L D  P  P
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICL-DILKEQWSPALTISKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.155e-18
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGP 553
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHW A IMGP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40

HSP 2 Score: 31.5722 bits (70), Expect = 1.155e-18
Identity = 23/60 (38.33%), Postives = 28/60 (46.67%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV FRTKVF P     G  C  D L++  +   TI + L  I +  L D  P  P
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICL-DILKEQWSPALTISKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.155e-18
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGP 553
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHW A IMGP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40

HSP 2 Score: 31.5722 bits (70), Expect = 1.155e-18
Identity = 23/60 (38.33%), Postives = 28/60 (46.67%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV FRTKVF P     G  C  D L++  +   TI + L  I +  L D  P  P
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICL-DILKEQWSPALTISKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.155e-18
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGP 553
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHW A IMGP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40

HSP 2 Score: 31.5722 bits (70), Expect = 1.155e-18
Identity = 23/60 (38.33%), Postives = 28/60 (46.67%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV FRTKVF P     G  C  D L++  +   TI + L  I +  L D  P  P
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICL-DILKEQWSPALTISKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.503e-18
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGP 553
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHW A IMGP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40

HSP 2 Score: 31.187 bits (69), Expect = 1.503e-18
Identity = 23/60 (38.33%), Postives = 28/60 (46.67%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV FRTKVF P     G  C  D L++  +   TI + L  I +  L D  P  P
Sbjct:   61 PFKPPKVAFRTKVFHPNVNSNGSICL-DILKEQWSPALTISKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.589e-18
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGPP 556
            MASKRILKELKDLQKDPP++CSAGPVAEDMFHW A IMGPP
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPP 41

HSP 2 Score: 29.261 bits (64), Expect = 5.589e-18
Identity = 21/60 (35.00%), Postives = 28/60 (46.67%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV F+TKV+ P     G  C  D L++  +   TI + L  I +  L D  P  P
Sbjct:   61 PFKPPKVSFKTKVYHPNINSNGSICL-DILKEQWSPALTISKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.039e-15
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGP 553
            MA++RILKELK+LQ+DPP SCSAGP  EDMFHW A IMGP
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGP 40

HSP 2 Score: 30.0314 bits (66), Expect = 3.039e-15
Identity = 23/60 (38.33%), Postives = 27/60 (45.00%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV FRTKVF P     G  C  D L+   +   TI + L  I +  L D  P  P
Sbjct:   61 PFKPPKVVFRTKVFHPNINSNGNICL-DILKDQWSPALTISKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.427e-14
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGP 553
            MASKRI KEL+DLQ+DPP SCSAGP  +DMF W A IMGP
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGP 40

HSP 2 Score: 30.0314 bits (66), Expect = 5.427e-14
Identity = 21/60 (35.00%), Postives = 28/60 (46.67%), Query Frame = 1

Query:  616 PSSPQKVRFRTKVFPPKFRGMGGKCAGDPLRKGRAQVSTILQGLAFILARWLMDTRPGRP 795
            P  P KV FRTKV+ P     G  C  D L++  +   T+ + L  I +  L D  P  P
Sbjct:   61 PFKPPKVAFRTKVYHPNINSNGSICL-DILKEQWSPALTVSKVLLSICS-LLTDPNPDDP 118

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.122e-12
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGPP 556
            MA KRI KEL+DL +DPP  CSAGPV +D+FHW A IMGPP
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP 41

HSP 2 Score: 25.409 bits (54), Expect = 2.122e-12
Identity = 18/65 (27.69%), Postives = 25/65 (38.46%), Query Frame = 3

Query:  534 QQPLWAPPDSPYARGEFLGYIXXXXXXXXXXXXGAF*DQGLPPEVQRHGRQMCWRSLKKREGPGL 728
            Q  +  PPDSPY  G F   I             AF  +   P +  +G  +C   L+ +  P L
Sbjct:   34 QATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG-SICLDILRSQWSPAL 97

[Close]

BLAST of EY734712 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.756e-12
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 2

Query:  434 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWAAAIMGPP 556
            M+ KRI KEL DL +DPP+SCSAGPV +D++HW A+IMGPP
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPP 41

HSP 2 Score: 25.409 bits (54), Expect = 2.756e-12
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3

Query:  534 QQPLWAPPDSPYARGEF 584
            Q  +  PPDSPYA G F
Sbjct:   34 QASIMGPPDSPYAGGVF 50

The following BLAST results are available for this feature:

BLAST of EY734712 vs. ExPASy Swiss-Prot

BLAST of EY734712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19


Match Name	E-value	Identity	Description
UBC9_ARATH	1.155e-18	95.00	SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia...	[more]
UBC8_ARATH	1.155e-18	95.00	Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t...	[more]
UBC4_SOLLC	1.155e-18	95.00	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ...	[more]
UBC10_ARATH	1.155e-18	95.00	Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ...	[more]
UBC28_ARATH	1.503e-18	95.00	Ubiquitin carrier protein E2 28 OS=Arabidopsis tha...	[more]
UBC11_ARATH	5.589e-18	90.24	Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ...	[more]
UBC29_ARATH	3.039e-15	77.50	Ubiquitin carrier protein E2 29 OS=Arabidopsis tha...	[more]
UBC30_ARATH	5.427e-14	75.00	Ubiquitin carrier protein E2 30 OS=Arabidopsis tha...	[more]
UBCD1_DROME	2.122e-12	70.73	Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi...	[more]
UBC4_CANAL	2.756e-12	68.29	Ubiquitin-conjugating enzyme E2 4 OS=Candida albic...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-098-D05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY734712 ID=EY734712; Name=EY734712; organism=Citrus sinensis; type=EST; length=899bp
CCACGCGTCCGCAAGAACGATAATTAAGCAAAAATTACCAACCCAAAAGA
GAATTTTTTAAAAAAATTGCCACGTATATAATCATGTAAAACAAGGTGGA
ATTTTCTCTCTCAACGACTTTTGCCTTGAATAACAAAGGCAAGAGATTGT
AGAGGAGAGAGGTCGGGACGGCCAGTAGCTGCCGCAGATCTGCTCCGAAG
CCGTTCCCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCA
CAAGGTCAATTTCGTCATTATTTTTAAGTAATTTTATTTTCTTTACCTTA
TTAAAATAAATTAAATAATTTGTTGTTTATAAGCTTAGATCGTTGCATTA
AGTAGCCGTATGTGGCTTAGCTCACAGTGTTGCAGATCCTAGGTTTGTTG
TAGCTTTAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTAT
TTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCG
CCGGTCCGGTGGCTGAAGACATGTTCCACTGGGCAGCAGCCATTATGGGC
CCCCCCTGATAGTCCATATGCACGAGGTGAATTTTTGGGGTACATTCCTT
TTCCTCCGGATTAACCCTTCAAGCCCCCAAAAGGTGCGTTTTAGGACCAA
GGTCTTCCCCCCGAAGTTCAGAGGCATGGGAGGCAAATGTGCTGGAGATC
CCTTAAGAAAAGGGAGGGCCCAGGTCTCTACCATTTTACAGGGCCTGGCT
TTCATTCTCGCTCGGTGGCTAATGGACACAAGACCTGGACGACCCGGTTG
GACCGGGGGATTGGTACCAAGGGACAGAGAGCGCAAGGGGGCGGTCCGTG
TGCGCCTGGCCGGGAGGCGGCCGACGGGTGAGCGGCCGGGGGCTGTAGG