EY734694

Overview
NameEY734694
Unique NameEY734694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: ALGA_PSEFL (Alginate biosynthesis protein algA OS=Pseudomonas fluorescens GN=algA PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.173e-79
Identity = 138/162 (85.19%), Postives = 150/162 (92.59%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWYQSGGNGG 488
            PDIYDTCVLTLERS  TADT+ +D++TFACCPDNSIDYAVMEKTQ ACVVPL+AGWSDVGCWASLW VN+KD +GNVSKGDVVIQDS+NCMIHGNGKLVSVIGL+NIVVVET DAMMIAHKDKVQGVKQMV+TLN+QGRSE+QNHCEVYRPWG Y S   GG
Sbjct:  213 PDIYDTCVLTLERSEQTADTVTLDDATFACCPDNSIDYAVMEKTQRACVVPLSAGWSDVGCWASLWAVNDKDIHGNVSKGDVVIQDSRNCMIHGNGKLVSVIGLDNIVVVETKDAMMIAHKDKVQGVKQMVSTLNDQGRSETQNHCEVYRPWGSYDSVDMGG 374          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: ALGA_PSESM (Alginate biosynthesis protein algA OS=Pseudomonas syringae pv. tomato GN=algA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.532e-76
Identity = 134/162 (82.72%), Postives = 146/162 (90.12%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWYQSGGNGG 488
            PDIYDTC+LTLERS    D ++ID STFACCPDNSIDYAVMEKTQ ACVVPL+AGWSDVGCW+SLW+VN KDA+GNV+KGDVVIQDS+NCMIHGNGKLVSVIGL+NIVVVET DAMMIAHKDKVQGVKQMV TLNEQGR+E+QNH EVYRPWG Y S   GG
Sbjct:  213 PDIYDTCLLTLERSVQDGDALEIDASTFACCPDNSIDYAVMEKTQRACVVPLSAGWSDVGCWSSLWEVNAKDAHGNVTKGDVVIQDSRNCMIHGNGKLVSVIGLDNIVVVETKDAMMIAHKDKVQGVKQMVATLNEQGRTETQNHLEVYRPWGSYDSVDMGG 374          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: ALGA_PSEPK (Alginate biosynthesis protein algA OS=Pseudomonas putida (strain KT2440) GN=algA PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.990e-75
Identity = 131/161 (81.37%), Postives = 144/161 (89.44%), Query Frame = 3
Query:    6 DIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWYQSGGNGG 488
            DIYDTCVL LERS    D + IDE+TFACCPDNSIDYAVMEKTQ ACVVP++AGWSDVGCW+SLW+V+EKD NGNV+KGDVV+QDS+NCMIHGNGKLVSVIGLENIVVVET DAMMIAHKDKVQGVKQMV TL+EQGR+E+QNH EVYRPWG Y S   GG
Sbjct:  215 DIYDTCVLALERSQEDGDVLSIDEATFACCPDNSIDYAVMEKTQRACVVPMSAGWSDVGCWSSLWEVHEKDDNGNVTKGDVVVQDSRNCMIHGNGKLVSVIGLENIVVVETKDAMMIAHKDKVQGVKQMVKTLDEQGRTETQNHLEVYRPWGSYDSVDMGG 375          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: ALGA_PSEAE (Alginate biosynthesis protein algA OS=Pseudomonas aeruginosa GN=algA PE=1 SV=3)

HSP 1 Score: 259.225 bits (661), Expect = 1.217e-68
Identity = 118/161 (73.29%), Postives = 137/161 (85.09%), Query Frame = 3
Query:    6 DIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWYQSGGNGG 488
            DIYDTC+L LERS H  D ++ID +TF CCPDNSIDYAVMEKT  ACVVPL+AGW+DVG W+S+WDV+ KDANGNV+KGDV++ DS NC++HGNGKLVSVIGLE+IVVVET DAMMIAHKD+VQ VK +V  L+ QGRSE+QNHCEVYRPWG Y S   GG
Sbjct:  214 DIYDTCLLALERSQHDGDLVNIDAATFECCPDNSIDYAVMEKTSRACVVPLSAGWNDVGSWSSIWDVHAKDANGNVTKGDVLVHDSHNCLVHGNGKLVSVIGLEDIVVVETKDAMMIAHKDRVQDVKHVVKDLDAQGRSETQNHCEVYRPWGSYDSVDMGG 374          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: MANC_SALMO (Mannose-1-phosphate guanylyltransferase OS=Salmonella montevideo GN=manC PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.565e-44
Identity = 80/157 (50.96%), Postives = 112/157 (71.34%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWYQS 473
            PDIY  C L +E +    D I +DE +F  CPD SIDYAVMEKT  A VVPL AGWSDVG W+SLW++++KD+NGNV+KGDV+  ++ NC +H    LV+ +G+++++VV+T DA+++A+ + VQ VK++V  +  + R E   H EVYRPWG Y S
Sbjct:  215 PDIYKACSLAMESAVTDLDFIRVDEDSFCACPDESIDYAVMEKTNDAVVVPLNAGWSDVGSWSSLWEISDKDSNGNVTKGDVLSHNADNCYLHAETGLVTAVGVKDLIVVQTKDAVLVANTNCVQDVKKIVEKIKLENRHEHITHREVYRPWGKYDS 371          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: RFBA_VIBCH (Putative mannose-1-phosphate guanylyltransferase OS=Vibrio cholerae GN=rfbA PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.292e-41
Identity = 76/153 (49.67%), Postives = 109/153 (71.24%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWG 461
            P+IY  C L ++  +H  D I +    F  CPD+SIDYAVME T+L  VV + AGWSDVG W++LW+V++KDA+GNV +GD ++  + NC I+   KLV+ +GL++IVVVET DA+++A K++VQ VK++V  L  + R+E + H E YRPWG
Sbjct:  213 PEIYRQCELAMQGLSHDYDFIRVGVEEFLKCPDDSIDYAVMEHTKLGVVVSMDAGWSDVGSWSALWEVSDKDADGNVCQGDAILSGTSNCYIYAPNKLVAAVGLKDIVVVETKDAVLVADKNQVQEVKKIVEHLKAENRAEYREHRERYRPWG 365          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: XANB_XANCP (Xanthan biosynthesis protein xanB OS=Xanthomonas campestris pv. campestris GN=xanB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.957e-40
Identity = 79/157 (50.32%), Postives = 108/157 (68.79%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWYQS 473
            P I D C    E     AD   +D+  FA  P +SIDYAVMEKT  A VVPL AGW+DVG W+SL DV+E+D  GN   GDV+  D KN   +G+ +L++++GLEN+VVVET+DA+++ H+D++Q VK++V+ +   GRSE+  H +VYRPWG Y S
Sbjct:  212 PAIADACQKAWEGGKRDADFTRLDKDAFASSPSDSIDYAVMEKTADAVVVPLDAGWNDVGSWSSLLDVSEQDGQGNAHHGDVIQLDCKNTYAYGS-RLIAMVGLENVVVVETDDAVLVGHRDRIQEVKEVVSQIKSAGRSEATWHRKVYRPWGAYDS 367          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: XANB_XANCB (Xanthan biosynthesis protein xanB OS=Xanthomonas campestris pv. campestris (strain B100) GN=xanB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.957e-40
Identity = 79/157 (50.32%), Postives = 108/157 (68.79%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWYQS 473
            P I D C    E     AD   +D+  FA  P +SIDYAVMEKT  A VVPL AGW+DVG W+SL DV+E+D  GN   GDV+  D KN   +G+ +L++++GLEN+VVVET+DA+++ H+D++Q VK++V+ +   GRSE+  H +VYRPWG Y S
Sbjct:  212 PAIADACQKAWEGGKRDADFTRLDKDAFASSPSDSIDYAVMEKTADAVVVPLDAGWNDVGSWSSLLDVSEQDGQGNAHHGDVIQLDCKNTYAYGS-RLIAMVGLENVVVVETDDAVLVGHRDRIQEVKEVVSQIKSAGRSEATWHRKVYRPWGAYDS 367          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: RFBM_SALMU (Mannose-1-phosphate guanylyltransferase OS=Salmonella muenchen GN=rfbM PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.889e-39
Identity = 77/163 (47.24%), Postives = 106/163 (65.03%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWY---QSGGN 482
            PDIY  C   +   N   D I ID+  FA CP +SIDYAVME T+ A VVP+ AGWSDVG W+SLWD+++KD   NV  GD+   +SK+  I+     +S IG+ N+V+V+T DA++++ KD VQ VK++V+ L    R+E + H EV+RPWG +    SG N
Sbjct:  216 PDIYQACENAVGSINPDLDFIRIDKEAFAMCPSDSIDYAVMEHTRHAVVVPMNAGWSDVGSWSSLWDISKKDPQRNVLHGDIFAYNSKDNYIYSEKSFISTIGVNNLVIVQTADALLVSDKDSVQDVKKVVDYLKANNRNEHKKHLEVFRPWGKFSVIHSGDN 378          
BLAST of EY734694 vs. ExPASy Swiss-Prot
Match: RFBM_SALTY (Mannose-1-phosphate guanylyltransferase rfbM OS=Salmonella typhimurium GN=rfbM PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.817e-38
Identity = 73/155 (47.10%), Postives = 101/155 (65.16%), Query Frame = 3
Query:    3 PDIYDTCVLTLERSNHTADTIDIDESTFACCPDNSIDYAVMEKTQLACVVPLTAGWSDVGCWASLWDVNEKDANGNVSKGDVVIQDSKNCMIHGNGKLVSVIGLENIVVVETNDAMMIAHKDKVQGVKQMVNTLNEQGRSESQNHCEVYRPWGWY 467
            P+IY  C   +   N   D I ID+  F  CP +SIDYAVME TQ A V+P++AGWSDVG W+SLWD++ KD   NV KGD+      +  I+     +S IG+ N+V+V+T DA+++A+KD VQ VK++V+ L    R+E + H EV+RPWG Y
Sbjct:  215 PEIYKACEKAVGHINPDLDFIRIDKEEFMSCPSDSIDYAVMEHTQHAVVIPMSAGWSDVGSWSSLWDISNKDHQRNVLKGDIFAHACNDNYIYSEDMFISAIGVSNLVIVQTTDALLVANKDTVQDVKKIVDYLKRNDRNEYKQHQEVFRPWGKY 369          
The following BLAST results are available for this feature:
BLAST of EY734694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ALGA_PSEFL1.173e-7985.19Alginate biosynthesis protein algA OS=Pseudomonas ... [more]
ALGA_PSESM3.532e-7682.72Alginate biosynthesis protein algA OS=Pseudomonas ... [more]
ALGA_PSEPK2.990e-7581.37Alginate biosynthesis protein algA OS=Pseudomonas ... [more]
ALGA_PSEAE1.217e-6873.29Alginate biosynthesis protein algA OS=Pseudomonas ... [more]
MANC_SALMO3.565e-4450.96Mannose-1-phosphate guanylyltransferase OS=Salmone... [more]
RFBA_VIBCH6.292e-4149.67Putative mannose-1-phosphate guanylyltransferase O... [more]
XANB_XANCP6.957e-4050.32Xanthan biosynthesis protein xanB OS=Xanthomonas c... [more]
XANB_XANCB6.957e-4050.32Xanthan biosynthesis protein xanB OS=Xanthomonas c... [more]
RFBM_SALMU5.889e-3947.24Mannose-1-phosphate guanylyltransferase OS=Salmone... [more]
RFBM_SALTY3.817e-3847.10Mannose-1-phosphate guanylyltransferase rfbM OS=Sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-098-A10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734694 ID=EY734694; Name=EY734694; organism=Citrus sinensis; type=EST; length=627bp
ACCCGGACATCTACGACACCTGCGTGCTGACCCTGGAGCGCAGCAACCAC
ACCGCCGACACCATCGACATCGACGAGTCCACCTTCGCTTGCTGCCCGGA
CAATTCCATCGACTACGCCGTGATGGAAAAAACCCAGTTGGCCTGCGTGG
TGCCATTGACCGCCGGCTGGAGCGACGTGGGTTGCTGGGCATCGCTGTGG
GACGTGAATGAAAAAGACGCCAACGGCAACGTCAGCAAGGGCGATGTGGT
GATCCAGGACAGCAAGAACTGCATGATCCACGGCAACGGCAAGCTGGTGT
CGGTGATCGGCCTGGAAAACATTGTGGTGGTGGAAACCAACGACGCGATG
ATGATTGCCCACAAGGACAAGGTCCAGGGCGTCAAGCAGATGGTCAACAC
CCTCAATGAGCAGGGCCGCAGCGAGAGCCAAAACCACTGCGAGGTGTACC
GTCCCTGGGGGTGGTACCAGTCCGGGGGAAATGGGGGGACGGTGTGCAGC
GAAGTGGATTACAAACAGGCGCCCCAGGAACGCCAGGGGGCTTATCGGGG
GCCGCGACAGGAGAGCCCACGCGGCCGCAGACCAACCGCACAACCCTGCC
CACACACCCGGGGCGCACCCACGCCAC
back to top