EY734692

Overview
NameEY734692
Unique NameEY734692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1236
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY734692 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.871e-16
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 2 
Query:  104 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 238
            NV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   68 NVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
[Close]
BLAST of EY734692 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.110e-16
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 2 
Query:  104 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 238
            NV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   69 NVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
[Close]
BLAST of EY734692 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.110e-16
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 2 
Query:  104 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 238
            NV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   69 NVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
[Close]
BLAST of EY734692 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.110e-16
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 2 
Query:  104 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 238
            NV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   69 NVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
[Close]
BLAST of EY734692 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.702e-15
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 2 
Query:  104 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 238
            NV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   60 NVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
[Close]
BLAST of EY734692 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.287e-14
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:  104 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 238
            NV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   69 NVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
The following BLAST results are available for this feature:
BLAST of EY734692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SMD2_DROME1.871e-1688.89Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE7.110e-1684.44Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN7.110e-1684.44Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN7.110e-1684.44Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_DICDI2.702e-1582.22Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_CAEEL2.287e-1482.22Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-098-A07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734692 ID=EY734692; Name=EY734692; organism=Citrus sinensis; type=EST; length=1236bp
TNNNNNNNNNNAGGGGGGGGGGGGTCCTATTNNNATGGTAACGGAAGACA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGCGTCC
GGAAATGTCAGGGAGATGTGGACTGAGTTGCCCAAGACTGGGAAAGGAAA
GAAGAAAGCTCTTCCGGTCAACAAAGACAGATTCATCAGCAAGATGTTCC
TTCGAGGGGACTCTGTAATCATTGTCCTTAGAAATCCCAAGTGATATAGC
GGTCTTTAGAAATCATTCTCGATGATGTTAGAACGGTTGTCTTGATATTT
GTGGACTATGTTGCGTGACAGATCCATTTACATTTTTAGGGATTAACATG
TTTGGTCTGAAAGTTTATTATAAAGTCAGTGACTTTTATTTGTCTCCACT
AGCCCGTTGATTTTTGTAGTCAGGTGATTATATTACCTGACCAAGGGATA
TATGATGGTTCAGACTTCAGATAAAAAAAGCAAAGAGGGAAAAACAGCAG
AAGCCCACCAAGAAACGGCAAGCGGCACGGGGCGCGGCTGCAGTCATCCG
GGGGGGCGCGGCGCGCTCCCGCGCCGTCAGGGCGTGCGGTGTCTATCGTG
GTTGCGGCGTGCGCAGAACACGGGTCGGCACAAGGAACAGAAGACTGCGC
TCAGAAACGGACGAGACAGTGCCCGGCGACCCCCCTCGCTTCCGGCGGCC
GCGTAGGGCATCGCTCAAGCGGTGGCGGCCGGTGTTCGTCGTAGCAGACG
CCGGCAAGGCACTGGTCCCTCCCCGGCNGCCGCCCCGCCTCGCGGACGGG
GCGGGCGACCACTACATCGCGCGAGGTCGACGATGCTACCCAGGACCGCA
TGCTCGCGGCGCAGAGTAGAGTCTGTAGTAAGTGAAGGGAAAACGCGGTC
GCATGGGGACTCGACATAAGCATGAAGGAAACGGGGAACGCCAACGGTAT
CACACACTCNATCTCTTATAATTATGGTATGGGATATAGAGCGCTAGTCT
TTCCGAGTCGCACACCCGTGCGAGCTGGGCATCTACTAACAATAGCATAA
ACTCTTCACTCGTGTCCTTAACCGTCCACAATGAAATAATGTCTCGCACA
CCAGTGGGAAGCCGTGCGCGGGCGCACTGGGCCGGATGACCACTATACAC
TATCCTCAGCGAGGACCTGGGTGCCGCGGGCGCTACTAGCTCTCTCCGAG
GAAGAGTGGAAGAGGAGGGGCGGAGAGGTCTGGACG
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