EY732426

Overview
NameEY732426
Unique NameEY732426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY732426 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 7.861e-54
Identity = 91/130 (70.00%), Postives = 109/130 (83.85%), Query Frame = 2
Query:   53 WDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 442
            WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2206 WDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of EY732426 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 7.861e-54
Identity = 91/130 (70.00%), Postives = 109/130 (83.85%), Query Frame = 2
Query:   53 WDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 442
            WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2206 WDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of EY732426 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.299e-48
Identity = 85/131 (64.89%), Postives = 101/131 (77.10%), Query Frame = 2
Query:   53 WDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEG-EMAEGDREDTFS 442
            WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D G+NP GY+PTHYEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L  P+EYYHEDHRP HF  F   ++       DRED F+
Sbjct: 2199 WDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329          
BLAST of EY732426 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.031e-37
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 2
Query:   44 HKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNL 397
            +K WDGEK +I++ S     C+LTAY LTPSG+EWG+ NKD+  N  GY P  YEKVQMLLSDRFLGFYMVPD G WNYNFMGVKH+ +M YG+KL  P+ +Y E HRP HF  ++ +
Sbjct: 2193 NKSWDGEKTVIISVSVA-WPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308          
BLAST of EY732426 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.264e-27
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   44 HKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPH-GYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 442
            H +WD  K + LT S+ PGS SL AY ++  G EWG  N D  S+   GY P+  EK Q+LLSDR  GF++VP+ G WNYNF G   +  M Y +KL  P  ++  +HRPTH + ++ LE  +  E D  D F+
Sbjct: 2231 HPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELETNDRLEEDMPDAFA 2363          
BLAST of EY732426 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.871e-25
Identity = 57/126 (45.24%), Postives = 72/126 (57.14%), Query Frame = 2
Query:   68 CIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSN-PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 442
            CI ++   TPGS SL+AY LT  GY+WG  NKD  +    G+ PT     Q+LLSDR  G +++P    WNY FMG        Y  K G P E+Y+E HRP HFL+FS L   E  E ++ D FS
Sbjct: 2288 CIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413          
The following BLAST results are available for this feature:
BLAST of EY732426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP8_MOUSE7.861e-5470.00Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN7.861e-5470.00Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL1.299e-4864.89Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI1.031e-3761.02Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO1.264e-2744.03Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
PRP8_YEAST5.871e-2545.24Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-061-H05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732426 ID=EY732426; Name=EY732426; organism=Citrus sinensis; type=EST; length=810bp
CCAGCCACGCGTCCGCTCACTCTCATGCGCGGATTCTAGAAAACATAAAC
AATGGGATGGAGAGAAATGCATTATCTTGACTTGTAGTTTCACCCCAGGT
TCCTGCTCGTTAACTGCATACAAGCTTACTCCAAGTGGTTATGAGTGGGG
AAGAGTTAACAAGGACACAGGAAGCAATCCCCATGGATATCTTCCAACTC
ACTATGAGAAGGTCCAAATGCTTCTGAGTGACCGGTTCCTTGGTTTCTAC
ATGGTTCCCGACAACGGTCCATGGAACTATAACTTCATGGGAGTGAAGCA
TACAGTGAGCATGAAATATGGTGTCAAGCTTGGGACTCCTCGAGAATACT
ACCATGAGGACCATAGGCCAACTCATTTCTTGGAGTTCAGCAACTTGGAG
GAGGGTGAAATGGCAGAGGGAGATCGTGAGGATACATTCTCATAAGCCTA
TTGATGCTATTTTGAGGTCGTAATCTTTCTTGTGAATTAAATTGTAGCAT
TTGCTTGGAAACTGCTAGACTGGAGTAGATTTACTTTACCAACATGGGGA
TGAAGCAGTGCCCCATTTTTGGTCGTTATAAAAACGTGTCTACTTATGGG
ACAGTTGTAATTCTCTGTAGAATGATAGTTTGACGTGTAAATATATACGG
TAACGAGGTTTCATACATTGTCTGGTGATGCTGGATCCTGAAAGTCCTCT
ATGTGGTATTACGGAGTGGCCTTGCCGATGTCAAGAGATAGCGGTACGGC
GGAGGAAGGTTAGAGCAAAATGCAAGAGGGGCGCGCCCGTCTATTAGGTT
CGCTTTTGTT
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