EY756412

Overview
NameEY756412
Unique NameEY756412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY756412 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.684e-41
Identity = 99/239 (41.42%), Postives = 122/239 (51.05%), Query Frame = 1 
Query:   13 LGLRPGATAXXXXXXXXXXXXXXXXXFPIARXXXXXXXXXXXXXXXXXXXXXFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINS------KFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPL---TQYTXXXXXXXXXXXXXXXXXXXXTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNK 702
            LGLRPGATA                 F + R                      D DNWEV RSR+MPRGD       P R Q PLI K PSIN       + LPQG+G +I GK++ L  G+  P +RPS + +   PL   T  +                     K+  A L+KKT SLLEEYF IRILDEA QC+EEL++P YHPE+VKEAI LAL+K    V+P+++LLE L  K
Sbjct:  460 LGLRPGATANMRNGRNAPGGPLSPGGFSVNRPGTGGMMPGMPGSRKMPGMPGLDNDNWEVQRSRSMPRGD-------PLRNQGPLINKVPSINKPSPINPRLLPQGTGALI-GKSALL--GTGGPPSRPSSLTASPTPLPAQTTASPKPSSATPASVPIPDKAASSAKVIPAGLQKKTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHLYTK 688

HSP 2 Score: 40.817 bits (94), Expect = 1.684e-41
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 2 
Query:  719 DIXTGCXLYGSLLDDIGIDLPK 784
            D+  GC LYGSLL+DIGIDLPK
Sbjct:  695 DLENGCLLYGSLLEDIGIDLPK 716
The following BLAST results are available for this feature:
BLAST of EY756412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF41_WHEAT1.684e-4141.42Eukaryotic initiation factor iso-4F subunit p82-34... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-C11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756412 ID=EY756412; Name=EY756412; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGTCTTGGTCTGCGTCCTGGTGCAACTGCAATGATGAGAAA
TGGTCGTACAGGGGCTACTGGAGGGATGGGTCCTGGAGGCTTTCCCATTG
CACGGCCTGGTACTGGGGGCATGATGCCTGGAATGCCTGGAACCCAGAAA
ATGCCTGGAATGCCTGGGTTTGATACTGACAATTGGGAGGTTCCTCGTTC
CCGGACAATGCCAAGAGGTGATAGCAAAAGTCCGTCTCAATTTCCAGGTC
GTGTGCAGTCACCTTTGATCGGAAAATCACCATCAATCAATTCAAAATTT
TTGCCTCAAGGAAGTGGCGGGATCATATCTGGAAAAACAAGTGCCTTGTT
GCAGGGTAGTCCTACTCCTTCAGCCCGTCCTTCTGGAATTGCTTCAGGGG
TTGAACCTTTAACTCAATATACTAAGCCTGTTGCTCCTGCTGCATCAGTA
GTTGCTTCTCCCGAGAAGCCTTCAGCTCCTGTCACAAAATTAAATCTTGC
TGATCTCCGCAAAAAAACCGTATCGCTGCTTGAGGAATATTTCAGTATTC
GAATTCTCGATGAAGCACTGCAATGCGTTGAGGAACTGAGAGCCCCAACT
TACCATCCAGAGGTTGTTAAAGAAGCAATAGCCCTTGCCCTGGAAAAGAT
CCCACCGTGCGTGGAACCAGTCATACAGCTCCTTGAGTTTTTGCTGAATA
AGATGTCTTGANCACAGAGACATANGAACCGGCTGTNCTCTGTATGGCTC
GTTATTAGATGATATTGGCATTGATTTACCAAAGCACCAATAACTTTGGT
GAGATGGTGGCAAAGTNGNTGNTGCGAAAAGTTNGACTTCATGTTTTGAA
GAAGTCTAAAGAGGTGAGATACATGT
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