EY732276 | Citrus Genome Database

Overview


Name	EY732276
Unique Name	EY732276
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	638

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.142e-31
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPHILGEEHYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  412 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 493

HSP 2 Score: 26.9498 bits (58), Expect = 6.142e-31
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  497 LSQPFHVAEVFTGA 510

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_ACTDE (ATP synthase subunit beta, mitochondrial (Fragment) OS=Actinidia deliciosa GN=ATPB PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.245e-31
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPHILGEEHYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:   23 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 104

HSP 2 Score: 26.9498 bits (58), Expect = 6.245e-31
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  108 LSQPFHVAEVFTGA 121

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.998e-31
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPHILGEEHYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  409 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 490

HSP 2 Score: 26.5646 bits (57), Expect = 7.998e-31
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV E+FTGA
Sbjct:  494 LSQPFHVAEIFTGA 507

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.999e-31
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPHILGEEHYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  406 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 487

HSP 2 Score: 26.5646 bits (57), Expect = 7.999e-31
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV E+FTGA
Sbjct:  491 LSQPFHVAEIFTGA 504

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.999e-31
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPHILGEEHYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  406 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 487

HSP 2 Score: 26.5646 bits (57), Expect = 7.999e-31
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV E+FTGA
Sbjct:  491 LSQPFHVAEIFTGA 504

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.356e-30
Identity = 65/82 (79.27%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPHILGE+HYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  410 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKMTVARARKI 491

HSP 2 Score: 26.9498 bits (58), Expect = 1.356e-30
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  495 LSQPFHVAEVFTGA 508

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.766e-30
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPH+LGE+HYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  402 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 483

HSP 2 Score: 26.9498 bits (58), Expect = 1.766e-30
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  487 LSQPFHVAEVFTGA 500

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.766e-30
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRMLSPH+LGE+HYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  403 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 484

HSP 2 Score: 26.9498 bits (58), Expect = 1.766e-30
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV EVFTGA
Sbjct:  488 LSQPFHVAEVFTGA 501

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.836e-27
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSRQISELGIYPAVD LDSTSRML+P   GEEHYNTARGVQ VL N +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  398 LDATTVLSRQISELGIYPAVDPLDSTSRMLTPES-GEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 478

HSP 2 Score: 26.5646 bits (57), Expect = 4.836e-27
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2

Query:  254 LDPPFHVGEVFTGA 295
            L  PFHV E+FTGA
Sbjct:  482 LSQPFHVAEIFTGA 495

[Close]

BLAST of EY732276 vs. ExPASy Swiss-Prot
Match: ATPBM_CHLRE (ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.936e-25
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 1

Query:    1 LDATTVLSRQISELGIYPAVDALDSTSRMLSPHILGEEHYNTARGVQNVLHN*QNLAHMIAIWGMDDLSEHDEFTVPRPPKI 246
            LDATTVLSR I+ELGIYPAVD LDSTSRML+P+I+G EHYN ARGVQ VL + +NL  +IAI GMD+LSE D+ TV R  KI
Sbjct:  358 LDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNIIGAEHYNIARGVQKVLQDYKNLQDIIAILGMDELSEEDKLTVARARKI 439

HSP 2 Score: 22.3274 bits (46), Expect = 1.936e-25
Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 2

Query:  254 LDPPFHVGEVFTG 292
            L  PF V EVFTG
Sbjct:  443 LSQPFQVAEVFTG 455

The following BLAST results are available for this feature:

BLAST of EY732276 vs. ExPASy Swiss-Prot

BLAST of EY732276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPBM_HEVBR	6.142e-31	80.49	ATP synthase subunit beta, mitochondrial OS=Hevea ...	[more]
ATPBM_ACTDE	6.245e-31	80.49	ATP synthase subunit beta, mitochondrial (Fragment...	[more]
ATPBO_ARATH	7.998e-31	80.49	ATP synthase subunit beta-3, mitochondrial OS=Arab...	[more]
ATPBN_ARATH	7.999e-31	80.49	ATP synthase subunit beta-2, mitochondrial OS=Arab...	[more]
ATPBM_ARATH	7.999e-31	80.49	ATP synthase subunit beta-1, mitochondrial OS=Arab...	[more]
ATPBM_NICPL	1.356e-30	79.27	ATP synthase subunit beta, mitochondrial OS=Nicoti...	[more]
ATPBM_ORYSJ	1.766e-30	78.05	ATP synthase subunit beta, mitochondrial OS=Oryza ...	[more]
ATPBM_MAIZE	1.766e-30	78.05	ATP synthase subunit beta, mitochondrial OS=Zea ma...	[more]
ATPBM_DAUCA	4.836e-27	75.61	ATP synthase subunit beta, mitochondrial OS=Daucus...	[more]
ATPBM_CHLRE	1.936e-25	70.73	ATP synthase subunit beta, mitochondrial OS=Chlamy...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-704-059-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY732276 ID=EY732276; Name=EY732276; organism=Citrus sinensis; type=EST; length=638bp
TTGGATGCCACGACTGTGTTGTCGCGTCAAATCTCTGAGCTTGGTATATA
TCCTGCTGTCGATGCTCTGGATTCCACATCCCGTATGCTTTCTCCGCACA
TTTTGGGCGAGGAACACTACAACACTGCTCGTGGTGTGCAGAATGTTCTT
CACAACTGACAGAATCTCGCACATATGATCGCCATCTGGGGTATGGATGA
CCTTAGTGAACATGACGAGTTCACTGTTCCTCGACCACCTAAGATCCACG
GTTCTTGACCCACCCTTCCATGTGGGGGAAGTTTTCACAGGTGCCCTGCC
CAGTATGTGAGTTGAATGAGACCATGGCGGTCTCCCGGCAGTGTCGGATG
GACAGAGGAGCAGCGGAAGAGAGCGCTCTACGTGATGGGGAGGCCCACGA
GCCAACGCGGCGCCCCCACCATCCACCCACCCCACTCCCATCCCCCCCCC
GCACCCGCCAACCGCCCCTCAGCGCCCCCCCCCGGGCCGGGGCAGCGTCC
CCCCTGGGCGGCCCACGCGGCTCCTGGGATCCCCGCCACGCGCCCGAGCT
CGGGCCGCGGGCGCGGCCGGCGGGGCGCGGGGCACCGGCGGCGGGGGNTN
TGAGAGGAGGGAAGGGGGTGGGGGGGTCGCGCGGCGCC