EY732263

Overview
NameEY732263
Unique NameEY732263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY732263 vs. ExPASy Swiss-Prot
Match: RBGA_BACSU (Ribosome biogenesis GTPase A OS=Bacillus subtilis GN=rbgA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 3
Query:   48 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSL 455
            W+  HMA A R + +++ L+DI+ E+ DARIP SS    + +     +  RI++LNK D A     ++W   F+ Q   S  +NS N   + + +    + LQ     +R          +  +++GIPNVGKS L N L
Sbjct:    5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED--ILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAK--GVKPRAIRALIIGIPNVGKSTLINRL 140          
BLAST of EY732263 vs. ExPASy Swiss-Prot
Match: MTG1_MOUSE (Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 45/142 (31.69%), Postives = 76/142 (53.52%), Query Frame = 3
Query:   48 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPS-FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 461
            W+  HMA   + +   +  VD ++EV DARIPFS     F +L    P      +LVLNKMDLA  T+ ++ +   +++   +    N    +N+K+ +  +   +R   +  + A +    +M++G+PNVGKS+L NSL +
Sbjct:   29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNKMDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRY-HRAETPEYCIMVVGVPNVGKSSLINSLRR 164          
The following BLAST results are available for this feature:
BLAST of EY732263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBGA_BACSU8.537e-1432.14Ribosome biogenesis GTPase A OS=Bacillus subtilis ... [more]
MTG1_MOUSE1.363e-1131.69Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-059-B02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732263 ID=EY732263; Name=EY732263; organism=Citrus sinensis; type=EST; length=849bp
CCACGCGTCCGATAGGAACTGCGGTGAGTCAAAAGAAAGGAGGAGGTTGG
TACGGCCCTCACATGGCCGCAGCCACTCGTGCCATCGCTGATCGGATGCC
GTTAGTTGATATCATCCTCGAAGTCAGAGACGCTAGGATTCCATTTTCAT
CTGAGTTTGATCAATTAAGGAACCACCACCCTTTTTCTTCATCTAGGAGA
ATCCTGGTTCTTAACAAGATGGACCTCGCGAGCCCAACTCAGTTCAAGGA
GTGGATCACCTTTTTCGACCAGCAAAACTGCCCTTCTTTTGGCGTCAATT
CCCATAACAAGGACAATGTCAAGGAGTTTCTTAAATTTTTACAAGCTCAT
GTCAGAAATTTAAGGAAAAGTGATTATGATGCTTCAAGTGATACCGTAAC
GGTAATGCTGCTTGGGATTCCTAATGTTGGAAAGTCAGCCCTTGCCAACT
CTTTGCATCAAATCGGCAGGATTACTGCTGCAGGTATTTCTGGTATTCTC
TTNAGGTTTGCTTGTGATAGTATTAATTTATTTGGTTTATGATGTGTACT
GATTTGCTTACCCGCCCCACCGCGAAAAAAAAGAGATGCTGGTTTGAAAT
TATGTGAGTAATGATGGTGAAAATATTGAGACGATCACAGGTGCTGTTGA
GATACCAACATGGGGTCCCGAGATTTGGAAGGTCGGTGCGGGGGAGTTCG
GTTCGAGATTACAAGGATGGTTAAAAATTTTTAGCGTCTATTGTCTGGCC
CTGCGGCCGTTTGGGTTGGGGAAAGAGGAAGCGGGGAAGGTGAGGGCTGG
GAGCTTGTGATTCGCATGGCTGGGATGAGAAGAGGATAGCGGGCGTTGT
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