EY756238

Overview
NameEY756238
Unique NameEY756238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8317 contig Csv1_Contig8317:18..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756238 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 3
Query:   45 MASISSTNFPALLPRSGFVPKGLT--HASPVCGLPAMATTRGRVRCSLDEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIY 413
            MA+I++++  +L+ R+  V        +SP+ GLP+M T R +V CS++ K                                   VDERM+TEGTGLPFGLSNN LGWILFGVFGLIWALYF+Y
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSM-TKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMAL-VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVY 123          
BLAST of EY756238 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.588e-17
Identity = 53/123 (43.09%), Postives = 63/123 (51.22%), Query Frame = 3
Query:   48 ASISSTNFPALLPRSGFVPKGLTHASPVCGLPAMATTRGRVRCSLDEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 416
            AS  S   PALL     +   +  ++PV GLP M   +G VRCS++ K                                   VDERM+TEGTGLPFGLSNN LGWILFGVFGLIW  +F+YT
Sbjct:    8 ASTVSAARPALL-----LKPTVAISAPVLGLPPMGKKKGGVRCSMETKQGNVSVMGAGVSAAATAALTAVMSNPAMAL-----VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYT 120          
BLAST of EY756238 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:  297 VDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 416
            VDERM+TEGTGL  GLSNN LGWIL GVFGLIW+LY IYT
Sbjct:   71 VDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYT 110          
The following BLAST results are available for this feature:
BLAST of EY756238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL1.372e-1843.20Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH2.588e-1743.09Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.470e-1282.50Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756238 ID=EY756238; Name=EY756238; organism=Citrus sinensis; type=EST; length=596bp
CCACGCGTCCGTTGATTAACCTGCAGGGCAAAAAACAAAAAAAAATGGCA
TCAATTTCATCAACCAACTTTCCTGCATTGCTCCCAAGATCAGGTTTTGT
GCCCAAGGGCTTAACTCACGCATCACCAGTCTGTGGCCTGCCTGCAATGG
CAACAACAAGGGGACGTGTGAGATGCAGCTTAGATGAAAAGGCACCAGCT
GCTGCCAGCAGCAAGAGCTCAAGAGCAAGCATGGTTGCATCACTTATGGC
AGCCGCCGCAGCCTTGAGTACGGCCGCAGGGTCAGCCATGGCGTTGGTGG
ATGAGAGAATGACCACAGAAGGAACAGGGCTTCCATTTGGACTAAGCAAC
AACACTCTTGGGTGGATTCTCTTTGGTGTGTTTGGATTGATTTGGGCTCT
CTATTTTATTTACACTGGCGATCTTGAAGAAGATGAAGAGTCTGGCTTGT
CCCTTTGAATTAAGGGTTATTTAAACTTAGCTTGTTGAATTAATTAATGC
CCTCTTGGTAAAGAACTGGAAACCTTTAAATCAACCAAAGAAAAGCTTTT
GGCTCTTGNAAANNANNNNNNANNANNAAAAAAAAAAAAAAANNNG
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