EY756200

Overview
NameEY756200
Unique NameEY756200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:425..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 4.082e-41
Identity = 88/116 (75.86%), Postives = 91/116 (78.45%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 359
            PGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  124 PGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.513e-40
Identity = 87/116 (75.00%), Postives = 89/116 (76.72%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 359
            PGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTL                      EYQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  124 PGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.925e-39
Identity = 85/116 (73.28%), Postives = 89/116 (76.72%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 359
            PGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  124 PGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.840e-26
Identity = 72/116 (62.07%), Postives = 77/116 (66.38%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 359
            PGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTL                      EYQKLLA+RLKEQRE+RSESLAKKRSRL
Sbjct:   79 PGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNTTAE-FTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRL 189
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.547e-23
Identity = 61/113 (53.98%), Postives = 70/113 (61.95%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP  L                      EY KLLA RLKE +E+R E +AK+R
Sbjct:  122 PGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.488e-22
Identity = 59/113 (52.21%), Postives = 70/113 (61.95%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:  122 PGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:  122 PGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:  122 PGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:  122 PGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 3 
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:  122 PGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
The following BLAST results are available for this feature:
BLAST of EY756200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS62_ARATH4.082e-4175.8640S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS6_ASPOF4.513e-4075.0040S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS61_ARATH2.925e-3973.2840S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_TOBAC2.840e-2662.0740S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_ICTPU6.547e-2353.9840S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_ONCMY2.488e-2252.2140S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_RAT3.249e-2252.2140S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE3.249e-2252.2140S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA3.249e-2252.2140S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN3.249e-2252.2140S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756200 ID=EY756200; Name=EY756200; organism=Citrus sinensis; type=EST; length=579bp
CCACGCGTCCGCCTGGACTTACCGATACAGAAAAGCCCAGAATGAGAGGT
CCCAAGAGAGCATCGAAGATCAGGAAGTTGTTCAACCTTTCCAAGGAGGA
TGATGTTAGGAAGTACGTTAACACCTATCGTAGGACCTTCACAACAAAAT
CTGGTAAGAAGGTTAGCAAGGCACCGAAAATTCAGAGGTTGGTAACTCCT
TTGACTCTGCAAAGGAAGCGTGCAAGAATTGCAGAAAAGAAGCAGAGAAT
TGCCAAGGCCAAGGCTGAAGCAGCGGAATACCAGAAGCTCCTTGCTACCA
GGTTGAAGGAGCAGCGTGAACGCCGCAGTGAGAGTTTGGCAAAGAAGAGG
TCTAGGCTCTCTGCTGCTTCAAAGCCATCTATTGCAGCTTAGATTAGATT
CTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTGTCCTGCTGAATTCT
TTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGACTTAATATCCCATGG
AATGTGATACAATAACCTTCATAGACACTTTTCGATTTTGTTTACTTAAA
TTGGTTGATGCTCAGCTATTTTCTTTAAA
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