EY756106

Overview
NameEY756106
Unique NameEY756106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756106_ssr97 microsatellite EY756106_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1026 contig Csv1_Contig1026:44..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.310e-30
Identity = 66/72 (91.67%), Postives = 71/72 (98.61%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 353
            VNNMVLFD++TYDKLLSEAPKYKLITPS+LSDRLRI+GSLARKAIR+LMARG IRMVSAHASQQIYTRATNT
Sbjct:   37 VNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.310e-30
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 353
            VNNMVLFDQ TYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+GLIRMVSAH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.940e-30
Identity = 64/72 (88.89%), Postives = 72/72 (100.00%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 353
            VNNMVLFDQATYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+G+IRMV+AH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.146e-29
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 350
            VNNMVLFDQATYDKLLSEAPK+KLITPSILSDRLRINGSLAR+AIRELMA+G IRMVSAH+SQQIYTRAT+
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.390e-27
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            VNNMVLFDQATYDKL+SEAPK+KLITPSILSDRLRINGSLARKAIR+LM +G IRMVS H+SQQI TRAT
Sbjct:   36 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 105          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_AMACR (40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 350
            VNN+VLFD AT+DKLLSEA K K++T + LS+R RINGSLAR+AIREL++RG I+MV  H+S QIYTR+TN
Sbjct:   36 VNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.270e-20
Identity = 45/70 (64.29%), Postives = 61/70 (87.14%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITPS++S+RL+I GSLAR A++EL ++G+I++VS H++Q IYTRAT
Sbjct:   40 LNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRAT 109          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of EY756106 vs. ExPASy Swiss-Prot
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  138 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 347
            +NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
The following BLAST results are available for this feature:
BLAST of EY756106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_SOLLC2.310e-3091.6740S ribosomal protein S25 OS=Solanum lycopersicum ... [more]
RS252_ARATH2.310e-3090.2840S ribosomal protein S25-2 OS=Arabidopsis thalian... [more]
RS254_ARATH3.940e-3088.8940S ribosomal protein S25-4 OS=Arabidopsis thalian... [more]
RS253_ARATH1.146e-2991.5540S ribosomal protein S25-3 OS=Arabidopsis thalian... [more]
RS251_ARATH2.390e-2787.1440S ribosomal protein S25-1 OS=Arabidopsis thalian... [more]
RS25_AMACR7.447e-2169.0140S ribosomal protein S25 OS=Amaranthus cruentus G... [more]
RS25_BRABE1.270e-2064.2940S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_SHEEP6.305e-2062.8640S ribosomal protein S25 OS=Ovis aries GN=RPS25 P... [more]
RS25_RAT6.305e-2062.8640S ribosomal protein S25 OS=Rattus norvegicus GN=... [more]
RS25_MOUSE6.305e-2062.8640S ribosomal protein S25 OS=Mus musculus GN=Rps25... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756106 ID=EY756106|Name=EY756106|organism=Citrus sinensis|type=EST|length=498bp
TTTCGATCGACCCACGCGTCCGAGATCCAATTGCTCCAAAGAAGGACAAG
GCTCCCCCTCCATCCTCAAAGCCTGCGAAATCCGGAGGCGGCAAGCAGAA
GAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAAGTGAACAACATGG
TGTTGTTTGATCAGGCAACCTATGACAAGCTCCTGTCCGAGGCTCCTAAG
TACAAGCTTATCACTCCTTCCATTCTCTCCGATCGTCTAAGGATTAATGG
ATCGCTTGCAAGGAAGGCAATAAGAGAGCTTATGGCTAGAGGTTTGATCA
GGATGGTGTCTGCTCACGCAAGCCAGCAGATTTACACTAGGGCAACCAAC
ACCTAAGTCTCTTTTGATATTTGCTTCTTAGTTTATATGTAGTTTCGTTC
TGCCGTGTTTTGACTGCTATTATTTTTGTTTCTTGTGAATCTATTTGAGA
GTGTACAAGTATAATTTAGAGTTTTATTTACATTTCTTGTTTGATGAA
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