EY756035

Overview
NameEY756035
Unique NameEY756035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 3.401e-107
Identity = 193/243 (79.42%), Postives = 208/243 (85.60%), Query Frame = 3
Query:   39 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPSNEVGYPGGIFNPLNFAPTDXAKEXGACHGRLAMXAFLGFIVQXHVTGKGHLKTSCTYL-*PWH 752
            MATVTT ASA++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAK GEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT  AKE    +GRLAM AFLGF+VQ +VTGKG  +    +L  PWH
Sbjct:    1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWH 243          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 8.377e-106
Identity = 195/242 (80.58%), Postives = 206/242 (85.12%), Query Frame = 3
Query:   39 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPSNEVGYPGGIFNPLNFAPTDXAKEXGACHGRLAMXAFLGFIVQXHVTGKGHLKTSCTYL-*PWH 752
            MATVTTQASAA+F PC  KSRFL GSSGKLNR VA +PV  S SASFKVEAK GEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP+ EVGYPGGIFNPLNFAPT  AKE    +GRLAM AFLGFI+Q +VTGKG       ++  PWH
Sbjct:    1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 242          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.634e-67
Identity = 129/203 (63.55%), Postives = 151/203 (74.38%), Query Frame = 3
Query:  150 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDA-GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPSNEVGYPGGIFNPLNFAPTDXAKEXGACHGRLAMXAFLGFIVQXHVTGKGHLKTSCTYL-*PWH 752
            P S+     V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W    GK  YFASSST   +  +   YVEIRRWQDIKNPGSVNQDPIFK YSLP +E GYPG +FNPLNFAP +  KE    +GRLAM AFLGF+VQ +V GKG  +    +L  PWH
Sbjct:   21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPLEN-KEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWH 221          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.112e-49
Identity = 107/227 (47.14%), Postives = 136/227 (59.91%), Query Frame = 3
Query:   87 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPSNEVGYPGGI-FNPLNFAPTDXAK-----EXGACHGRLAMXAFLGFIVQXHVTGKGHLKTSCTYL 740
            A+K+ FL G   ++++ +A     S A   V A  +   W PG   P +L+GSLPGD GFDPLGL  DPE+LKW  QAELV+SRWAMLG  G+ +PE  TKIG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     AK          +GRLAM A +G   Q   TG G +     +L
Sbjct:   29 ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 255          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.097e-48
Identity = 102/226 (45.13%), Postives = 135/226 (59.73%), Query Frame = 3
Query:   90 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPSNEVGYPGGI-FNPLNFAPTDXAK-----EXGACHGRLAMXAFLGFIVQXHVTGKGHLKTSCTYL 740
            +K+ FL G   ++++        S+ +  V A  +   W PG   P +L+GSLPGD GFDPLGLA DPE+L+W  QAELV+ RWAMLG  G+ +PE+ TKIGI+N P WY AG+ EYF  ++TLF++E +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     AK          +GRLAM A +G   Q   TG G +     +L
Sbjct:   30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 255          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.148e-28
Identity = 93/253 (36.76%), Postives = 129/253 (50.99%), Query Frame = 3
Query:   42 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PSNEVGYPGG-IFNPLNFAPTDXA----KEXGACHGRLAMXAFLGFIVQXHVTGKG 713
            ++++T A AA     +  S+ +T  +  + R  +  PV   A+ ++     W     S +YL+G LPGD GFDPLGL+ DPE        KW    E++N R+AMLG  G + PE+  K G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L        S +  YPGG +FNPL F   + +    K     +GRLAM A LG+ +Q  VTG G
Sbjct:   10 SSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQL-----WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVG 249          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.562e-27
Identity = 84/202 (41.58%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  195 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PSNEVGYPGG-IFNPLNFAPTDXA----KEXGACHGRLAMXAFLGFIVQXHVTGKG 713
            W     S +YL+GSLPGD GFDPLGL+ DPE        +W    E++N R+AMLG VG + PE   K+G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L        S    YPGG  FNPL F   + +    K     +GRLAM A LG+ +Q  VTG G
Sbjct:   58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 251          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.479e-25
Identity = 77/212 (36.32%), Postives = 109/212 (51.42%), Query Frame = 3
Query:  159 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPSNEVGYPGGIFNPLNF----APTDXAKEXGACHGRLAMXAFLGFIVQXHV-TGKGHLKTSCTYL-*PWH 752
            ++ S +V    EW PG   P +L+GS PGD GFDPLGLA  PEN + + ++E+ + RWAML V G+L+PE       +   +W     G+A Y      + +  T+  IEF+   + E +R        ++ +DP  K+         YPGG F+PL F    A  +  K     +GRLAM AF+GF VQ     G G L+   T+L  PWH
Sbjct:   36 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWH 230          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.238e-24
Identity = 76/231 (32.90%), Postives = 116/231 (50.22%), Query Frame = 3
Query:  102 FLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPSNEVGYPGGIFNPLNF----APTDXAKEXGACHGRLAMXAFLGFIVQXHV-TGKGHLKTSCTYL-*PWH 752
            FL+ +  K    + +   +++   +     +W+PG   P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE       +   +W     G+A Y      + +  T+  IEF+   +VE +R        S+ +D         S +  YPGG F+PL +    A  +  K     +GRLA+ A +GF VQ     G G L+   T+L  PWH
Sbjct:   18 FLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKD---------SEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWH 231          
BLAST of EY756035 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.159e-22
Identity = 72/195 (36.92%), Postives = 100/195 (51.28%), Query Frame = 3
Query:  186 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPSNEVGYPGG-IFNPLNFAPT-------------DXAKEXGACHGRLAMXAFLGF 683
            K  W+P +        P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAML V+G+ + + +T I       W++AG    A    S  TL   + +L  +VE +RW D  +P S + +         + +S  + E GYPGG  F+PL+ A T             +  K     H RLAM A L F
Sbjct:   57 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245          
The following BLAST results are available for this feature:
BLAST of EY756035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB24_ARATH3.401e-10779.42Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA8.377e-10680.58Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU2.634e-6763.55Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_PETHY1.112e-4947.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.097e-4845.13Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB13_SOLLC3.148e-2836.76Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.562e-2741.58Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU9.479e-2536.32Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.238e-2432.90Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4_SPIOL1.159e-2236.92Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756035 ID=EY756035; Name=EY756035; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCGAGGCTCATAACTCTCGTCGGGAAACATGGCAACCGTC
ACAACACAAGCCTCGGCCGCTGTGTTCCGGCCATGCGCATCCAAATCCAG
GTTCCTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTGGCCTTGAAAC
CAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGGGGAGTGGTTA
CCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCCCCGGTGACAA
TGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGT
ATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTT
GGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGTTCC
TCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCC
TTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGG
CAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCA
GTACAGCTTGCCNTCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACC
CACTCAACTTTGCACCCACTGATGANGCAAAGGAGAANGGAGCTTGCCAT
GGGAGATTGGCAATGNTGGCATTCTTGGGATTTATTGTTCAGCANCATGT
GACAGGCAAAGGGCATTTGAAAACCTCCTGCACATATCTCTGACCATGGC
ACACACCATCGTCCAGACACTTAGTGGTAATTTATCAAAGATGGATGGGC
ATTCGGGATCCTGTTCTTTCCTTTGTAACATGATCTGTAGTTTTTGAGGG
AGATTGACATCATTGAAACATGGAAACCTCATGGACGGGGAACTATGATG
GATTTATTTACCTTTTACCCCAAAAAAAA
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