EY755975

Overview
NameEY755975
Unique NameEY755975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:351..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.583e-43
Identity = 85/121 (70.25%), Postives = 93/121 (76.86%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 385
            SPLLRG+EVGLAHGF LVGPFV AGPLRNT              +VILS+CLT+YG+ASF+EGEPSTAP LTLTGRKK PD LQTADGWAK         ISGVIWAYFLLYVL+LPY+VK
Sbjct:   97 SPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.112e-43
Identity = 87/121 (71.90%), Postives = 92/121 (76.03%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 385
            +PLLRGVEVGLAHGF LVGPFV AGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQLQTADGWAK         ISGV WAYFLLYVL+LPYFVK
Sbjct:   99 NPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.568e-41
Identity = 83/121 (68.60%), Postives = 92/121 (76.03%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 385
            +PLLRGVEVGLAHGFLLVGPFV AGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQLQ+ADGWAK         +SGV WA FL+YVL+LPY+ K
Sbjct:   96 NPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.403e-39
Identity = 77/121 (63.64%), Postives = 91/121 (75.21%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 385
            SPLLRG+EVGLAHG+LLVGPF   GPLRNT +            V ILS+CLT+YG+ASF+EGEPSTAP LTLTGRKKE D+LQTA+GW++         +SG +WAYFLLYVL+LPYF K
Sbjct:   89 SPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLP 373
            SPLLRG+E+G+AHG+ LVGPF   GPLRNT++            ++IL++CL++YG  SF + +                D LQT +GW +         + G  +AY LL   N+P
Sbjct:   42 SPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDDAK--------------DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 355
            SPLLRG+E+G+ HG+ LVGPF   GPLRN+E+            ++I++ CL IYG+ SF+  +                +QLQ+A GW +         I G  +AY L+
Sbjct:   42 SPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------EQLQSAKGWRQFTSGWLVGSIGGASFAYILI 138          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 355
            SPLLRG+E+G+AHG+ ++GPF   GPLRNT++            ++I SI + IYGI +F   E +              D+LQTA+GW +         + G  +AY LL
Sbjct:   42 SPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSENN--------------DKLQTANGWRQLASGFLLGAVGGAGFAYILL 138          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.042e-15
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLP 373
            SPLLRG+E+G+AHG+ L+GPF   GPLR T++            ++IL+ CL++YG  SF+              R    D LQTA+GW +         + G  +AY LL   N+P
Sbjct:   42 SPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_PORYE (Photosystem I reaction center subunit XI OS=Porphyra yezoensis GN=psaL PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.049e-14
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLP 373
            SPLLRG+E+G+AHG+ L+GPF   GPLR T++            ++IL+ CL++YG  SF+              R    D LQT++GW +         + G  +AY LL   N+P
Sbjct:   42 SPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RADSKDPLQTSEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of EY755975 vs. ExPASy Swiss-Prot
Match: PSAL_TRIEI (Photosystem I reaction center subunit XI OS=Trichodesmium erythraeum (strain IMS101) GN=psaL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   23 SPLLRGVEVGLAHGFLLVGPFVNAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 355
            SP+LRG+EVG+AHG+ +VGP+   GPLR++ +            V+I +ICL+ YG+ SF    P  A            D L+T++GW++         + G + A+FLL
Sbjct:   47 SPILRGLEVGMAHGYFIVGPWTKLGPLRDSAVANLGGLISTIALVLIATICLSAYGLVSFQGKSPEGA------------DPLKTSEGWSQFTGGFFIGAMGGAVVAFFLL 145          
The following BLAST results are available for this feature:
BLAST of EY755975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PSAL_CUCSA3.583e-4370.25Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH6.112e-4371.90Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL2.568e-4168.60Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU2.403e-3963.64Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GRATL3.161e-1536.75Photosystem I reaction center subunit XI OS=Gracil... [more]
PSAL_GUITH4.128e-1536.04Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_CYACA4.128e-1536.94Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_PORPU7.042e-1536.75Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_PORYE2.049e-1435.90Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_TRIEI4.564e-1435.14Photosystem I reaction center subunit XI OS=Tricho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-B07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755975 ID=EY755975; Name=EY755975; organism=Citrus sinensis; type=EST; length=526bp
TTCGATCGACCCACGCGTCCGCAGCCCACTTCTCAGAGGAGTAGAGGTGG
GGTTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAACGCAGGGCCA
TTGAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGG
CCTTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCAT
TCAGTGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGG
AAGAAGGAGCCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCAC
TGGAGGATTCTTCTTTGGTGGAATTTCTGGTGTCATTTGGGCTTATTTCC
TGCTTTACGTTCTTAACCTTCCCTACTTCGTTAAATAGAAATATGTAACA
TCTACTCTTTGGTTTTAAGATCCCATGTATCTCAATTTGCTACTCTGTAA
ATCTACCTGTTTGGGATGTTTATTGCAAATGAAACTTGCTTCAGTTACTG
AAAAAAAAAAAAAAAAAAAAAAAAAA
back to top