EY755961

Overview
NameEY755961
Unique NameEY755961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length958
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9966 contig Csv1_Contig9966:605..1562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY755961 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.273e-61
Identity = 114/199 (57.29%), Postives = 138/199 (69.35%), Query Frame = 1 
Query:    1 PRVRLTRFSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYXXXXXXXXXXXGVFYIFFENSDSFWNFPVARNQHGGPKIESI-LRDPQXXDDQNMWN 594
            P   L R  DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K+L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++RV+LT S EWG M+TKLTVP +WKEWQIY              Y+FFENSDSFW  P+ ++Q   PKI           +D + WN
Sbjct:  198 PLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFKKLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERVMLTTSSEWGEMVTKLTVPKEWKEWQIYALLFCLFMASVIAAYVFFENSDSFWKLPMGKDQK-RPKISLFGGSSSTPSEDHSRWN 395
The following BLAST results are available for this feature:
BLAST of EY755961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHF1_ARATH2.273e-6157.29SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-A02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755961 ID=EY755961; Name=EY755961; organism=Citrus sinensis; type=EST; length=958bp
CCACGCGTCCGCTTAACTCGCTTCTCGGATGAGAAGATTGAGTTATGCAG
ATTCTCCAAGGATGGGACAAAACCATTTTTGTTTTGCACAGTTCAAAGAG
GTGATAAAGCTCTCCTTGCGGTTTATGATATCAGTACATGGAACAAAATT
GGCCATAAGAGGCTGCTTAGAAAGCCTGCATCTGTATTGTCTATCAGCTT
GGATGGGAAGTATCTTGCTATGGGAAGCAAAGATGGGGACATCTGTGTTG
TCGATGTGAAAAAAATGGAAATCAATCATTGGAGTAAGAGGCTACACCTG
GGTACCTCCATTGCATTAGTTGAGTTCTGTCCCACCCAAAGGGTGGTGCT
TACCGCTTCTAAAGAGTGGGGAGCTATGATCACCAAGCTAACTGTTCCGG
CAGATTGGAAAGAGTGGCAGATTTACTCGTTGCTTTTAGCTCTATTTCTG
GCATCGGCTGGTGTATTTTACATTTTCTTCGAGAACTCCGATTCATTTTG
GAATTTTCCTGTTGCAAGAAATCAACATGGAGGACCAAAGATTGAATCCA
TTCTAAGAGATCCGCAGNCGNCCGATGATCAAAATATGTGGAATGCATTT
GATCCATTGGATATGTGATCAAACTATGTGGAATGCATTTGAACCATTGG
ATAACTGACCACTTGTTAAATTCCATCACCCAAAAGGTTTGAAAGCCATA
AATGAAAAATAATTCTTACTATTCATCAATGGGCCTTTTACTTTAAGATT
GTAGCCCCTAATCAGAAACCGCTTGGATCATGGCACCTATCATAAATTTT
TTTTTTTTAGGAAAAGGGGGTTTAAATGGGGGCGCCACCCCTTACTCCAA
TCCCATTGGAATTAAATCTTTTAAGGACCAACATTTCCCCTCCTATTTAT
TACCTGGTGAACAATACACAGGTGGTAAAAATAACACTCGCTTTTGGAAA
ATAAAAAA
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