EY755709

Overview
NameEY755709
Unique NameEY755709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY755709_ssr62 microsatellite EY755709_ssr62:62..79. BLAST: Citrus ESTs to Prunus persica proteins V1
EY755709_ssr93 microsatellite EY755709_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13237 contig Csv1_Contig13237:13..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.652e-18
Identity = 40/99 (40.40%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  429 DYKYLGTR-VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 722
            D  +LG R +  DG  G+YKW++Y +A      +GS L+  G++KG  IG++ +NRPEW++ D A   +S + V LY TLG +A++Y+VNH+ +  + C
Sbjct:   67 DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  372 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 719
            + ++ T +D F R +    +   LG+R         Y+W++Y E       +GSGLI  G    S   IGL+  NRPEW+IV+  C +YS + VPLYDTLG DA+ YIVN A +  +F
Sbjct:   87 YDDVRTMYDGFQRGIQVSNNGPCLGSRKPNQ----PYEWISYKEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIF 200          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.464e-16
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  372 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 719
            + ++ T +D F R +    +   LG+R         Y+W++Y +       +GS L+  G   S    IG++  NRPEW+I++ AC AYS + VPLYDTLG DA+ YIVN A +  +F
Sbjct:   86 YDDVRTLYDVFQRGIQVSNNGPCLGSRKPDQ----PYEWLSYKQVEDLSECIGSALLQKGFQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIF 199          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  372 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 719
            + ++ T +D F R +    D   LG+R         Y+W++Y +       +GS LI  G    S   IG++  NRPEW+ ++  C  YS + VPLYDTLG DA+ YIVN A +  +F
Sbjct:   87 YDDVRTMYDGFQRGIQVSNDGPCLGSRKPNQ----PYEWISYKQVAEMAECIGSALIQKGFKPCSEQFIGIFSQNRPEWVTIEQGCFTYSMVVVPLYDTLGTDAITYIVNKAELSVIF 200          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  372 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 719
            + ++ T ++ F R +    +   LG+R         Y+W++Y +       +GS LI  G        IG++  NRPEW+I++  C AYS + VPLYDTLG +A+ YIVN A +  VF
Sbjct:   86 YDDVTTLYEGFQRGIQVSNNGPCLGSRKPDQ----PYEWLSYKQVAELSECIGSALIQKGFKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVF 199          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  480 YKWMTYGEAGTARTEVGSGLIYHGISK--GSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 716
            Y+W++Y E       +GSGL+ H         IG++  NRPEW+IV+ AC  YS + VPLYDTLGP A++YI+N A +  V
Sbjct:  118 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPLYDTLGPGAIRYIINTADISTV 198          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.875e-14
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  480 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 716
            Y+W++Y E       +GSGL+ H    G+   IG++  NRPEW+I + AC  YS + VPLYDTLGP +++YI+N A +  V
Sbjct:  118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSIRYIINTADICTV 198          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  480 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 722
            YKW++Y +       +GS L++ G   S+   IG++  NRPEW+I + AC  YS ++VPLYDTLG +A+ Y++N A +  V C
Sbjct:  103 YKWISYKQVSDRAEYLGSCLLHKGYKPSQDQFIGIFAQNRPEWVISELACYTYSMVAVPLYDTLGAEAIIYVINRADISVVIC 185          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  480 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 722
            Y+W++Y +       +GS L++ G   S    +G++  NRPEW+I + AC  YS ++VPLYDTLGP+A+ +IVN A +  V C
Sbjct:  103 YRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVIC 185          
BLAST of EY755709 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  480 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 716
            Y+W++Y E       +GSGL+ H    G+   +G++  NRPEW+I + AC  YS + VPLYDTLGP ++ YI+N A +  V
Sbjct:  118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSISYIINTADICTV 198          
The following BLAST results are available for this feature:
BLAST of EY755709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
FCSA_DICDI3.652e-1840.40Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
ACSL1_MOUSE4.037e-1739.83Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL1_CAVPO4.464e-1637.29Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL1_RAT1.299e-1536.44Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL1_HUMAN4.935e-1535.59Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL6_HUMAN6.446e-1545.68Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL6_RAT1.875e-1444.44Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL5_RAT2.449e-1442.17Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
ACSL5_HUMAN3.199e-1442.17Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
ACSL6_MOUSE4.178e-1443.21Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-031-F08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755709 ID=EY755709; Name=EY755709; organism=Citrus sinensis; type=EST; length=895bp
CCTTCGTTTTTTATTCTAACACAATAATTAACAGATTCCCGAAACTAACA
GGAGGAAAAAATATTATTATTATTATTATTACCGACTTCATCTTCATTCA
TTCAAACAAGCAGGCAAGGAAAAGGAGAAATAAAATAAAATCAAAAGTCA
TGGATTCCACGGCAGCTCAACGTCGTTTAAAGGCCATTCACGGCCACCTT
CTCTGCGCAGACGACAGTTCATCCTCTCAGCTCCGTCACAATCCCACCGC
CGGCGAGTACGCCCTCGAGCAGGGCTACAGTGTTGTGCTTCCCGAGAAAC
TGGATACGGGAAAATGGAACGTATACAGGTCTTCTCGATCACCGTTGAAG
CTTGTGAGTAGATTCCCGGATCATCCTGAAATTGGTACAACACATGACAA
TTTTGTGCGGGCAGTTGATACTTTTCGAGATTACAAATATCTGGGTACGC
GTGTCCGGGTTGATGGAACAGTTGGAGAGTACAAATGGATGACATATGGA
GAAGCTGGCACTGCTCGCACAGAAGTAGGTTCTGGCCTAATTTATCATGG
AATATCAAAGGGATCTTGCATTGGATTGTATTTTGTCAATAGACCGGAGT
GGCTTATTGTTGATCATGCCTGCTCTGCTTATTCNTTCATATCTGTTCCT
CTGTATGACACTCTTGGTCCAGATGCAGTCAAGTACATTGTAAATCATGC
TTCTGTACAAGCCGTATTTTGTGTGCCTCANACATGAATNNCTTGCTGAG
CTGCTTGTCTGAGGTTCCACCGTNCGTCTAATTGTGGTTATTGGCGAATA
NATGATCAAATCCATCACTTTCATAACAACTGGGGTCAAATTTAACATAT
TCAATTTACTCAGNAGGGCCGCAATAACCTTCACCCTTTCTCTTC
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