EY755662

Overview
NameEY755662
Unique NameEY755662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755662 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.522e-38
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 3
Query:  423 LERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 659
            LERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:   93 LERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of EY755662 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.283e-37
Identity = 69/79 (87.34%), Postives = 78/79 (98.73%), Query Frame = 3
Query:  423 LERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 659
            LE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   34 LEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of EY755662 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.133e-36
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 3
Query:  423 LERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 659
            LE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   67 LEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of EY755662 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  423 LERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 641
            L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   60 LAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of EY755662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH3.522e-3889.87Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE2.283e-3787.34Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU1.133e-3686.08Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.391e-1860.27Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-031-B05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755662 ID=EY755662; Name=EY755662; organism=Citrus sinensis; type=EST; length=806bp
TTCTGGTNACGCCTCGCCAGTTCTCGGTNCCGGNAATTCCCGGGCTCGAC
CCACGCCGTCCGGTAAAACAAAAAAAAAAAAAAAAAAAAATTTGCGCTTG
CAGCAGGGAGCCATGNGCAGCCATGAAACTCTAGTGTANCTCGCATGCAA
NCTTATGCCATTTCAGGGCAGTGCGTGGATCANTCTGAGCTCAATGCANA
AGATTGTTTCAGNTTTCAACCCCCGGCTTGTGCATGNGCCACANAAATGN
NCCTGTGATCAGAAGCTCAACAAGGTTGATGTNTTCAAAANGAATCAAGA
AGGACACTGATGGAAGGGGAGAGCTGCCATGGCTTTCTTCTAGCANGTTA
CCCCTTTTCACCACAGNCTACGTGCTGCGTGCTTCTTCTTCTGCTAATGC
TGNNGGGTCATCGATGAATACCCTTGAGAGAAGCAAAGCCAACAAGGAAT
TGAATGACCAGAAGAGATTGGCAACAAGTGGTGCAAACTTTGCCAGAGCA
TACACTGTTCAATTTGGCACATGCAAGTTCCCTGAGAACTTCACAGGCTG
CCAAGATCTTGCCAAGCAAAAGAAAGTGCCATTCATCTCGGATGATTTGG
AATTGGAGTGCAAAGGGAAAGATAAATACAAGTGTGGTTCCAATGTTTTC
TGGAAATGGTGAAGTGGGACAACTGATCTCTTTAAACATTTTATTTTACC
CTCCCATGTATCTAAGTTTCCATTGAAGAACCTTTACTTGGGCTTATTTG
TGTGTTATATTTTTCTGCTCAGTATATTTTTATATCCTCATCAAAAAAAA
AAAAAA
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