EY755542

Overview
NameEY755542
Unique NameEY755542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY755542_ssr597 microsatellite EY755542_ssr597:597..611. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13239 contig Csv1_Contig13239:1..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 7.418e-85
Identity = 159/208 (76.44%), Postives = 166/208 (79.81%), Query Frame = 3
Query:  189 MAMKRVASSAINAXXXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            MAM RVAS+A  A                      KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DLK     GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWN A +A+RAYDLEGKTVGTVG G I
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASPGP---KKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRI 205          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.386e-83
Identity = 151/208 (72.60%), Postives = 168/208 (80.77%), Query Frame = 3
Query:  189 MAMKRVASSAINAXXXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            MAM++ A + I A                      KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL+     GLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWN AG+AYRAYDLEGKT+GTVG G I
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRI 208          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 1.147e-77
Identity = 140/173 (80.92%), Postives = 152/173 (87.86%), Query Frame = 3
Query:  294 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWN AG+AYRAYDLEGKTVGTVG G I
Sbjct:   28 KKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRI 200          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.359e-77
Identity = 134/173 (77.46%), Postives = 152/173 (87.86%), Query Frame = 3
Query:  294 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+LMRIL+L+RNFLPGHHQ+++GEWN AG+A+R YDLEGKTVGTVG G I
Sbjct:   30 KKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRI 202          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.239e-73
Identity = 132/171 (77.19%), Postives = 147/171 (85.96%), Query Frame = 3
Query:  294 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCG 806
            KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWN AG+A+RAYDLEGKTVGTVG G
Sbjct:   29 KKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAG 199          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.567e-49
Identity = 95/174 (54.60%), Postives = 121/174 (69.54%), Query Frame = 3
Query:  297 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXG--LTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL      G  ++V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+ISG WN A +A  ++D+EGK + T+G G I
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRI 175          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.599e-47
Identity = 91/170 (53.53%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  309 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDL--KXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL        G+TVAEVTGSNVVSVAE  +M IL+LVRNF+P H Q+ +G+WN A VA   +DLE K VGTVG G I
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRI 171          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.786e-46
Identity = 89/174 (51.15%), Postives = 118/174 (67.82%), Query Frame = 3
Query:  297 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLK--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DL        G+TVAEVTGSNVVSVAE  LM IL+LVRNF+P H Q+  G W+ A  A   +DLEGK VGTVG G I
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRI 176          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.951e-41
Identity = 81/173 (46.82%), Postives = 117/173 (67.63%), Query Frame = 3
Query:  297 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL+      +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW+ AGVA   YDLE K + TVG G I
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRI 177          
BLAST of EY755542 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.951e-41
Identity = 81/173 (46.82%), Postives = 117/173 (67.63%), Query Frame = 3
Query:  297 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLKXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNXAGVAYRAYDLEGKTVGTVGCGPI 812
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL+      +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW+ AGVA   YDLE K + TVG G I
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRI 177          
The following BLAST results are available for this feature:
BLAST of EY755542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FDH_SOLTU7.418e-8576.44Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_ARATH2.386e-8372.60Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH1_ORYSJ1.147e-7780.92Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ4.359e-7777.46Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_HORVU2.239e-7377.19Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_PICAN8.567e-4954.60Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH_EMENI3.599e-4753.53Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_NEUCR1.786e-4651.15Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH2_YEAST2.951e-4146.82Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
FDH1_YEAST2.951e-4146.82Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-029-E11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755542 ID=EY755542; Name=EY755542; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGCAAAAGCAAAAACGTTATCAAATTTCATGTTTTCACCAT
CTCGTTTAAATAAATTAAAATAAAAAGGCAAAGCAGAAGTCAAAGCCTGC
CGTTAAAACTTGAAAAGGTTTCCCCTATAAAAGCGCTGTGCTTTTGTGAG
AACTCAGCAGTGTGAGTGACAAATTATATAATTGGGAGATGGCCATGAAG
AGAGTAGCTAGCTCTGCAATTAACGCTTTTGCTTCGTCGGGATTTCTTCG
TTCATCGTCGAGATTTTCTCGACACTATGCTTCTTCTGGAAGTAAGAAGA
TTGTTGGGGTGTTCTACAAGGGCAATGAATACGCTTCAATGAATCCCAAC
TTTCTTGGTTGTGTGGAGGGAGGCTGTGGCCTGCGTGAATGGCTGGAATC
GAAAGGTCACCAATATATTGTCACTGATGACAAAGAGGGACCAGACTGTG
AACTAGAGAAACATATTCCTGATCTCCATGTCCTCATATCTACCCCCTTC
CACCCTGCCTATGTTACGGCGGAAAGGATTAAGAAGGCCAAAAATTTGCA
ACTGCTTCTCACTGCTGGAGTTGGCTCTGATCATATTGATCTAAAAGCTG
CTGCTGCTGCTGGTTTAACTGTTGCTGAAGTTACTGGAAGCAATGTGGTT
TCAGTTGCTGAGGACGAGCTTATGAGAATCCTTATTCTTGTCCGTAATTT
CTTACCTGGACACCATCAAGTTATCAGTGGGGAATGGAATNGTGCCGGTG
TTGCTTATAGAGCTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGT
TGTGGACCCATTNGGCAGCTGTTGCTCCAACAACTAAACTTNCCATTGGT
AATCTCCTTTCATGACCGGGGGA
back to top