EY755504

Overview
NameEY755504
Unique NameEY755504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755504 vs. ExPASy Swiss-Prot
Match: ARPC4_DICDI (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.171e-44
Identity = 91/166 (54.82%), Postives = 119/166 (71.69%), Query Frame = 2
Query:  116 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLTFLSMRAEAFQVLRRKPVQGYDIIYLITNYLCEGMQNHKLYIFLCSSWRILINRLSILK*LCTRRGMLVATSFLQ 613
            MS     YL CIRNTL A++CLQNF  Q VERHNKPEVE+KTS EL+LNP++I RN+ E+ LIETSINS+RIS+ +K++DE++ IL KKF+ FL  RAE F +LRRKPV+GYDI +L+TN+  E M  HKL  F+      +   +S LK     RG +VA+ +L+
Sbjct:    1 MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNERVLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTNFHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLK 166          
BLAST of EY755504 vs. ExPASy Swiss-Prot
Match: ARPC4_MOUSE (Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 6.823e-43
Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2
Query:  116 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLTFLSMRAEAFQVLRRKPVQGYDIIYLITNYLCEGMQNHKLYIFLCSSWRILINRLSILK*LCTRRGMLVATSFLQ 613
            M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQADE+E IL  KF+ F+ MRAE F +LRRKPV+GYDI +LITN+  E M  HKL  F+      +   +S +K     R  +VA  FL+
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166          
BLAST of EY755504 vs. ExPASy Swiss-Prot
Match: ARPC4_HUMAN (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 6.823e-43
Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2
Query:  116 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLTFLSMRAEAFQVLRRKPVQGYDIIYLITNYLCEGMQNHKLYIFLCSSWRILINRLSILK*LCTRRGMLVATSFLQ 613
            M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQADE+E IL  KF+ F+ MRAE F +LRRKPV+GYDI +LITN+  E M  HKL  F+      +   +S +K     R  +VA  FL+
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166          
BLAST of EY755504 vs. ExPASy Swiss-Prot
Match: ARPC4_BOVIN (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 6.823e-43
Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2
Query:  116 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLTFLSMRAEAFQVLRRKPVQGYDIIYLITNYLCEGMQNHKLYIFLCSSWRILINRLSILK*LCTRRGMLVATSFLQ 613
            M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQADE+E IL  KF+ F+ MRAE F +LRRKPV+GYDI +LITN+  E M  HKL  F+      +   +S +K     R  +VA  FL+
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166          
BLAST of EY755504 vs. ExPASy Swiss-Prot
Match: ARPC4_SCHPO (Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe GN=arc4 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.423e-40
Identity = 85/165 (51.52%), Postives = 116/165 (70.30%), Query Frame = 2
Query:  116 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLTFLSMRAEAFQVLRRKPVQGYDIIYLITNYLCEGMQNHKLYIFLCSSWRILINRLSILK*LCTRRGMLVATSFL 610
            MSNTLR YL  +R+TL A+L L+ F  + VER ++PEVE+  SPE+LL P+++ RNE E+CLIE+S+NS+R S+++KQ DE+E IL +KF+ FL  RAE+F +LRRKPVQGYDI +LITNY  E M  HKL  F+      +   +S +K     R  LVA ++L
Sbjct:    1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYL 165          
BLAST of EY755504 vs. ExPASy Swiss-Prot
Match: ARPC4_CAEEL (Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.127e-37
Identity = 83/166 (50.00%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  116 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLTFLSMRAEAFQVLRRKPVQGYDIIYLITNYLCEGMQNHKLYIFLCSSWRILINRLSILK*LCTRRGMLVATSFLQ 613
            MS TL+ YL  +R+TL AALCL+ F  Q VERHNKPEVE++TS ELL+ P+++ RN+ E+ LIE S+NS+RIS+ +KQ+DE+E IL  KF  F+  RA+ F VLRRKP+ GYDI +LIT    E M  HKL  FL    + +   +S +K     R  + A  FL+
Sbjct:    1 MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLK 166          
BLAST of EY755504 vs. ExPASy Swiss-Prot
Match: ARPC4_YEAST (Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae GN=ARC19 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.306e-37
Identity = 87/170 (51.18%), Postives = 109/170 (64.12%), Query Frame = 2
Query:  116 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVEL-KTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLTFLSMRAEAFQVLRRKPVQGYDIIYLITNYLCEGMQNHKLYIFLCSSWRILINRLSILK*LCTRRGMLVATSFLQPIV 622
            MS +LR YL  +R +L+AAL L NF  QEVERHN+PEVE+  TS ELLL P+ I RNE E+ LIE S+NS+R+SL VKQADE+E IL  KF  FL  RAEAF +LRR P+ GY I +LITN   E M+  KL  F+      +   +S +K     R   VA ++L   V
Sbjct:    1 MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVLIEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKHTESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEFV 170          
The following BLAST results are available for this feature:
BLAST of EY755504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARPC4_DICDI6.171e-4454.82Actin-related protein 2/3 complex subunit 4 OS=Dic... [more]
ARPC4_MOUSE6.823e-4355.42Actin-related protein 2/3 complex subunit 4 OS=Mus... [more]
ARPC4_HUMAN6.823e-4355.42Actin-related protein 2/3 complex subunit 4 OS=Hom... [more]
ARPC4_BOVIN6.823e-4355.42Actin-related protein 2/3 complex subunit 4 OS=Bos... [more]
ARPC4_SCHPO1.423e-4051.52Actin-related protein 2/3 complex subunit 4 OS=Sch... [more]
ARPC4_CAEEL1.127e-3750.00Probable actin-related protein 2/3 complex subunit... [more]
ARPC4_YEAST7.306e-3751.18Actin-related protein 2/3 complex subunit 4 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-029-B01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755504 ID=EY755504; Name=EY755504; organism=Citrus sinensis; type=EST; length=857bp
GGTTTTCGGTCCGGNATTAACCCCTCGACCCACGCGTCCGAAATACTTTT
ACAGACAGACGACGACGGCGTCCGATGCTATTCTAGGATCATTTCAAATC
GCTACACGCAGAAACATGTCAAACACATTGCGATTGTATTTGGCTTGCAT
AAGGAACACGCTAGACGCCGCCCTGTGTTTGCAGAATTTTCCTTGTCAAG
AAGTTGAAAGGCATAATAAACCAGAGGTTGAACTAAAGACCAGCCCAGAA
CTTCTACTGAATCCTATTTTGATATGTCGAAACGAGGCTGAAAAATGCTT
AATAGAGACATCTATCAACTCACTTCGAATAAGCCTTAAGGTAAAGCAGG
CAGATGAACTTGAAAACATACTAACTAAAAAATTTCTTACATTTTTGTCA
ATGAGAGCAGAAGCATTTCAAGTTTTGAGGAGAAAACCAGTGCAGGGTTA
TGATATCATCTATCTTATTACTAACTACCTTTGTGAGGGTATGCAGAATC
ATAAGCTCTACATTTTTTTGTGCAGTTCATGGAGGATTTTGATTAATAGA
TTATCGATTTTAAAATGACTGTGTACACGTCGTGGGATGTTGGTGGCTAC
TTCCTTTCTGCAACCAATTGTATGAATTATTGGGCTTTTTTTCTTCATAA
ATTCTGGCTACTTCGTCCTCTCTAAGTGATTGTTGTGCGCAACTGGTGTT
GTTGTTACCCCCATTAGCACGTATCAATTTTATGTATTCCTATTATTAAT
ATTTACTGTTTTTACTTTCTTTCACATCACTATTAATTAATTTCCTTTCT
TATTATTGCCTTTCTTTNTTNTTCTATCTTACTTCGATTTAAATAAAAAT
AAATAGT
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