GE213264

Overview
NameGE213264
Unique NameGE213264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13697 contig Csv1_Contig13697:1..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213264 vs. ExPASy Swiss-Prot
Match: DEF_NELNU (Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  104 MERSVRLFSTXXXXXXXX-ASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTE 271
            MER +RLFS+         A+EMG + AEAR CESQSHRFKG C+S +NCA+VCQTE
Sbjct:    1 MERGMRLFSSLVLVLLLVTATEMGPKVAEARTCESQSHRFKGACLSDTNCASVCQTE 57
The following BLAST results are available for this feature:
BLAST of GE213264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DEF_NELNU5.893e-1261.40Defensin-like protein OS=Nelumbo nucifera PE=3 SV=... [more]
back to top
Properties
Property NameValue
Genbank description115 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213264 ID=GE213264; Name=GE213264; organism=Citrus sinensis; type=EST; length=542bp
ATTTCGAGCGGCCGCCCGGGCAGGTGTTTTTGCACCAGTATCTCTTTTCT
CCTTTGCTCTCTCATCTAATCTCTCTTGATTATTTTTGCCTTGAAGACTA
AAGATGGAGCGCTCAGTGCGTTTATTTTCAACTGTTCTACTTGTGCTGCT
GCTTCTTGCCAGTGAAATGGGGCTGAGGGCGGCAGAAGCTAGGATATGCG
AGTCTCAGAGTCACCGGTTCAAGGGGCCATGTGTGAGTAAGAGCAACTGT
GCTGCTGTTTGCCAAACTGAAGGGTTCCACGGTGGCCACTGCCGTGGATT
CCGTCGTCGATGCTTTTGCACTAAAAGATGTTAAACACTTTATGAACAAG
CTAGTTTCTTTACAATAATAACAAGGATCCCTTATCCCTGTGGCCGGATA
CTTGATTTTGTTTGTTGTATTATCTTGGCGTATTTGCAGTTGTTGAGTTG
CTAGAGCTTTCATGTGTGAGGTGTGGTTGCGGTTTCTATTTATATTTGTA
ACCTTTTGTATATCTCAAGTACCTCGGCCGCGACCACGCTAA
back to top