EY729985

Overview
NameEY729985
Unique NameEY729985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729985_ssr56 microsatellite EY729985_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
EY729985_ssr73 microsatellite EY729985_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
EY729985_ssr260 microsatellite EY729985_ssr260:260..271. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY729985 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.185e-24
Identity = 64/144 (44.44%), Postives = 92/144 (63.89%), Query Frame = 1 
Query:  100 EKQQQRRELALLHSGDFLRRNSD---HRMMENSINRD-KPPIQEMDFFSSNNNQLHDQERKIESSTLVLDSGVNIGLNLHTSCSGISRTANDDKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLAHG 519
            E  Q RRE+A LHSG+FL  +SD   H+  E+ + R  +  I+E+DFF++ +         + ++T+V  SG N GL L  SC G S    DDK+ T++S LK EL+RLHEEN KL+++LD+ ++SYNDLQ ++LLA Q    G
Sbjct:    3 EHIQDRREIAFLHSGEFLHGDSDSKDHQPNESPVERHHESSIKEVDFFAAKSQPF--DLGHVRTTTIVGSSGFNDGLGLVNSCHGTSSNDGDDKTKTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQRRVLLARQTQVEG 144
The following BLAST results are available for this feature:
BLAST of EY729985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRK47_ARATH1.185e-2444.44Probable WRKY transcription factor 47 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-024-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729985 ID=EY729985; Name=EY729985; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGAAATTACTTGTGTACTTCAGTTGAAACTTGAAAATACTA
CATAGCAACAACAACAATAAAAACTACTACTACTCTTTCGTTGGTTATGG
AAAAACAACAGCAACGCCGTGAACTGGCACTCTTGCACTCCGGCGACTTT
CTCCGGCGAAACTCTGATCATCGCATGATGGAGAATTCCATCAATCGTGA
TAAGCCACCGATCCAAGAAATGGATTTCTTTTCTAGTAACAATAATCAAT
TGCATGATCAAGAAAGAAAGATCGAATCCTCAACTCTAGTTCTTGATTCT
GGTGTCAACATAGGATTAAATCTCCACACTTCATGTTCTGGAATTTCAAG
AACAGCAAATGATGATAAATCCCACACAGAACTGAGTGAGCTTAAAGGCG
AGTTACAAAGGTTGCACGAAGAGAACAGAAAGCTGAGAAACATGTTGGAT
CAGACAACCAAAAGTTACAATGATTTGCAGAGTCAACTACTCTTGGCAAT
GCAAAAACTGGCACATGGGAGCCCTNCAGGGCAGGTGAATTTGAAGGCTG
GTGCTTTCAATGGCATGCCAAGTCCTTTAATGTTAGCTNCACAATTTATG
GACCCACGGGCTTCTGCTGCATTGAATGTCAACGAGCCTTCGGTATCCGA
TGAACAGACACGAGAGCTGTCAGCTTCTCCAGCAAATACTGCTGAAGTAA
TTCAAAGGAGCTTGACATCCCCTTGACTAGAATATATTCCAGGAAAAGCA
GTTCTATAGTGAAGATGTGGCGAACGTCTCGAGTTGGGCTCTCCTAAAGT
CTAAACTTGATCTCACCCAAGACGATGAGCAGGTTCTGAAGTGCCTTTCT
TAGGGTAGGGTTCGGTAAAGCANATCAAAACTCTTTGGTATAAATCC
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