EY729978

Overview
NameEY729978
Unique NameEY729978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729978 vs. ExPASy Swiss-Prot
Match: SAC51_ARATH (Transcription factor SAC51 OS=Arabidopsis thaliana GN=SAC51 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.604e-27
Identity = 75/208 (36.06%), Postives = 95/208 (45.67%), Query Frame = 1
Query:    7 VRSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEEFDENHIS-GKECEMHEDTEEINALLXXXXXXXXXXXXXXXXXXVKSTDHSPVAIEGKYEKHDLTLEISEEVASSDGPNKRQKLL---NGGYNKSSQTDTACSVQLEGSH-------------ECDNDAESGYANGQTQKEEI 579
            + S QK LL+FDQSG+QT+L+    CP  L  P+    E           +K  +   ++    E+ +E H S G E EMHEDTEEINALL                  V ST HSP   EG   K +L     EE+   DGP KRQKLL   N   + SS   T  S QL GS                  D  SG +N Q++K++I
Sbjct:   93 LESSQKRLLIFDQSGDQTRLLQ---CPFPLRFPSHAAAE----------PVKLSELQGIEKAFKEDGEEFHKSDGTESEMHEDTEEINALL---YSDDDYDDDCESDDEVMSTGHSPYPNEGVCNKREL-----EEI---DGPCKRQKLLDKVNNISDLSSLVGTESSTQLNGSSFLKDKKLPESKTISTKEDTGSGLSNEQSKKDKI 276          

HSP 2 Score: 60.4622 bits (145), Expect = 1.604e-27
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  596 NMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV 748
            N QS+KDKI TAL+IL+ ++PGA G + L LLDEAIDYL+ LK   ++  V
Sbjct:  268 NEQSKKDKIRTALKILESVVPGAKGNEALLLLDEAIDYLKLLKRDLISTEV 318          
BLAST of EY729978 vs. ExPASy Swiss-Prot
Match: BH143_ARATH (Transcription factor bHLH143 OS=Arabidopsis thaliana GN=BHLH143 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.376e-12
Identity = 61/161 (37.89%), Postives = 84/161 (52.17%), Query Frame = 1
Query:    7 VRSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEV-SVNGFLQ-DKAIKRDQFTSVKPLLHEEFDENHISGKE-CEMHEDTEEINALLXXXXXXXXXXXXXXXXXXVKSTDHSPVAIEGKYEKHDLTLEISEEVASSDGP-NKRQKLLNGGYNKSS 477
            ++S +K  +VFDQSG QT+L+    C   L  P+++  E  ++ G L  +K   +D     K L HE+    H +G+E  EMHEDTEEINALL                  V ST HSP  +E +   +  T E+ E  ++ DGP  KRQKLL+  Y  SS
Sbjct:   88 LKSSRKRFIVFDQSGEQTRLLQ---CGFPLRFPSSMDAERGNILGALHPEKGFSKDHAIQEKILQHED----HENGEEDSEMHEDTEEINALL---YSDDDDNDDWESDDEVMSTGHSPFTVE-QQACNITTEELDETESTVDGPLLKRQKLLDHSYRDSS 237          
The following BLAST results are available for this feature:
BLAST of EY729978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SAC51_ARATH1.604e-2736.06Transcription factor SAC51 OS=Arabidopsis thaliana... [more]
BH143_ARATH6.376e-1237.89Transcription factor bHLH143 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-H07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729978 ID=EY729978; Name=EY729978; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGGTCTCTTCAGAAGGGTCTCTTAGTTTTTGATCAATCAGG
GAATCAAACACAGTTAGTTTATAGCTCTGTTTGCCCTTCTGTCTTGAATA
CACCAGCTACCCTTAAGAAAGAAGTTTCTGTAAATGGTTTTCTTCAAGAT
AAGGCAATTAAAAGAGACCAGTTTACTTCGGTTAAGCCTTTACTCCATGA
AGAATTTGATGAGAATCACATTAGTGGTAAAGAATGCGAGATGCATGAAG
ACACTGAAGAAATCAATGCCTTACTTTACTCGGATGGTGATGATGATTAT
AGTAATGGTGATGACAGCGAAGATGATGAAGTAAAGAGCACTGATCACTC
CCCAGTTGCAATTGAGGGAAAATATGAGAAGCATGATTTAACTCTGGAAA
TATCTGAAGAAGTTGCTAGCTCTGATGGTCCAAACAAAAGGCAGAAATTG
CTCAATGGTGGATACAATAAATCATCGCAAACTGACACAGCTTGTTCTGT
ACAATTGGAAGGGTCCCATGAGTGTGACAATGATGCAGAATCAGGCTATG
CCAATGGCCAGACGCAAAAGGAGGAAATAGATTTCATTTTGGGGTAACAT
GCAGTCAAGAAAGGATAAGATTCACACAGCTTTGAGAATTCTGCAGGGCA
TAATTCCTGGTGCTAATGGAAAGGACCCATTATCGCTTCTCGATGAAGCA
ATAGACTACTTACAGTCTTTAAAGCTGAAAGCTGTGGCTCTTGGAGTGTA
GCCACGTTTGAGTTGTGCTCCCTTCTTTACGTAGTATTAGCANCAGCAGC
CGCTGTAGTGGATTGGTGAAAGGGGTCTAAGAAGGGTGAANGGTNACCCA
AATNCTGGCTAATATGAG
back to top