EY729958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 7.370e-68 Identity = 102/123 (82.93%), Postives = 110/123 (89.43%), Query Frame = 1 Query: 181 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLIPQETALAWFK 549 E ARQI+G+R +QS T RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPE +AGLIPQETALAWF+ Sbjct: 17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQ 136 HSP 2 Score: 75.0998 bits (183), Expect = 7.370e-68 Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 2 Query: 560 PPSGNIQLLGRPLHTFRSENGTHGICRSTEIPDWGNPGIMGRQYFLGIEKYLGGSGDPAYPGGTLFNLWVWGKMRVYEGFXLRELRM-EIGTG-----GILGY 850 PP+G F E G DW PG MG+QYFLG+EK LGGSGDPAYPGG LFN +GK + ++EL++ EI G ILGY Sbjct: 141 PPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK----DEKSMKELKLKEIKNGRLAMLAILGY 239 HSP 3 Score: 72.4034 bits (176), Expect = 4.066e-12 Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 3 Query: 546 QTGVIPPAGTYNYWADPYTLFGLKMALMGFAEARRFQTGAIQESWAGNTSSGSR 707 QTGVIPPAGTYNYWAD YTLF L+MALMGFAE RRFQ WA S G + Sbjct: 136 QTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQ------DWAKPGSMGKQ 183
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 7.325e-65 Identity = 100/124 (80.65%), Postives = 106/124 (85.48%), Query Frame = 1 Query: 181 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLIPQETALAWFK 549 E RQ ARS S G SRKG +VRAA+TPPVKQG DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE + GLIPQETALAWF+ Sbjct: 17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQ 138 HSP 2 Score: 72.4034 bits (176), Expect = 7.325e-65 Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 3 Query: 546 QTGVIPPAGTYNYWADPYTLFGLKMALMGFAEARRFQTGAIQESWAGNTSSGSR 707 QTGVIPPAGTYNYWAD YTLF L+MALMGFAE RRFQ WA S G + Sbjct: 138 QTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQ------DWAKPGSMGKQ 185 HSP 3 Score: 70.4774 bits (171), Expect = 1.553e-11 Identity = 42/103 (40.78%), Postives = 52/103 (50.49%), Query Frame = 2 Query: 560 PPSGNIQLLGRPLHTFRSENGTHGICRSTEIPDWGNPGIMGRQYFLGIEKYLGGSGDPAYPGGTLFNLWVWGKMRVYEGFXLRELRM-EIGTG-----GILGY 850 PP+G F E G DW PG MG+QYFLG+EK GGSG+PAYPGG FN +GK + L+EL++ E+ G ILGY Sbjct: 143 PPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK----DEKSLKELKLKEVKNGRLAMLAILGY 241
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.704e-14 Identity = 48/114 (42.11%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 196 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519 I+GA A G R F+ R+ + V DRPLWF +LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AMLGA G PE + G++ Sbjct: 26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL 133
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13 Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 259 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519 R+A+T V DRPLWF +LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE + G++ Sbjct: 52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL 133
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.193e-12 Identity = 43/100 (43.00%), Postives = 51/100 (51.00%), Query Frame = 1 Query: 223 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519 P G S SF V A K+G W S YL GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG G + PE G+I Sbjct: 38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 HSP 2 Score: 25.409 bits (54), Expect = 1.193e-12 Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3 Query: 567 AGTYNYWADPYTLFGLKMALMGFAEARRFQ 656 AG Y+A TLF ++ L + E RR+Q Sbjct: 129 AGKEEYFASSSTLFVIEFILSHYVEIRRWQ 158
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-12 Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = 1 Query: 262 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519 +A T K A + W S YL GSL GD GFDPLGL+ DPE KW E++NGR+AMLG G + PE + G+I Sbjct: 42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 122 HSP 2 Score: 25.7942 bits (55), Expect = 3.393e-12 Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3 Query: 567 AGTYNYWADPYTLFGLKMALMGFAEARRFQ 656 AG Y+A TLF ++ L + E RR+Q Sbjct: 130 AGKEQYFASSSTLFVIEFILFHYVEIRRWQ 159 The following BLAST results are available for this feature:
BLAST of EY729958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY729958 ID=EY729958; Name=EY729958; organism=Citrus sinensis; type=EST; length=922bpback to top |