EY729958

Overview
NameEY729958
Unique NameEY729958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.370e-68
Identity = 102/123 (82.93%), Postives = 110/123 (89.43%), Query Frame = 1
Query:  181 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLIPQETALAWFK 549
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPE   +AGLIPQETALAWF+
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQ 136          

HSP 2 Score: 75.0998 bits (183), Expect = 7.370e-68
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  560 PPSGNIQLLGRPLHTFRSENGTHGICRSTEIPDWGNPGIMGRQYFLGIEKYLGGSGDPAYPGGTLFNLWVWGKMRVYEGFXLRELRM-EIGTG-----GILGY 850
            PP+G           F  E    G        DW  PG MG+QYFLG+EK LGGSGDPAYPGG LFN   +GK    +   ++EL++ EI  G      ILGY
Sbjct:  141 PPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK----DEKSMKELKLKEIKNGRLAMLAILGY 239          

HSP 3 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  546 QTGVIPPAGTYNYWADPYTLFGLKMALMGFAEARRFQTGAIQESWAGNTSSGSR 707
            QTGVIPPAGTYNYWAD YTLF L+MALMGFAE RRFQ       WA   S G +
Sbjct:  136 QTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQ------DWAKPGSMGKQ 183          
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.325e-65
Identity = 100/124 (80.65%), Postives = 106/124 (85.48%), Query Frame = 1
Query:  181 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLIPQETALAWFK 549
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE   + GLIPQETALAWF+
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQ 138          

HSP 2 Score: 72.4034 bits (176), Expect = 7.325e-65
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  546 QTGVIPPAGTYNYWADPYTLFGLKMALMGFAEARRFQTGAIQESWAGNTSSGSR 707
            QTGVIPPAGTYNYWAD YTLF L+MALMGFAE RRFQ       WA   S G +
Sbjct:  138 QTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQ------DWAKPGSMGKQ 185          

HSP 3 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 42/103 (40.78%), Postives = 52/103 (50.49%), Query Frame = 2
Query:  560 PPSGNIQLLGRPLHTFRSENGTHGICRSTEIPDWGNPGIMGRQYFLGIEKYLGGSGDPAYPGGTLFNLWVWGKMRVYEGFXLRELRM-EIGTG-----GILGY 850
            PP+G           F  E    G        DW  PG MG+QYFLG+EK  GGSG+PAYPGG  FN   +GK    +   L+EL++ E+  G      ILGY
Sbjct:  143 PPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK----DEKSLKELKLKEVKNGRLAMLAILGY 241          
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 48/114 (42.11%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  196 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE   + G++
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL 133          
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  259 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE   + G++
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL 133          
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.193e-12
Identity = 43/100 (43.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:  223 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE     G+I
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121          

HSP 2 Score: 25.409 bits (54), Expect = 1.193e-12
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  567 AGTYNYWADPYTLFGLKMALMGFAEARRFQ 656
            AG   Y+A   TLF ++  L  + E RR+Q
Sbjct:  129 AGKEEYFASSSTLFVIEFILSHYVEIRRWQ 158          
BLAST of EY729958 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-12
Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = 1
Query:  262 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPENSWQAGLI 519
            +A T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE   + G+I
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 122          

HSP 2 Score: 25.7942 bits (55), Expect = 3.393e-12
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  567 AGTYNYWADPYTLFGLKMALMGFAEARRFQ 656
            AG   Y+A   TLF ++  L  + E RR+Q
Sbjct:  130 AGKEQYFASSSTLFVIEFILFHYVEIRRWQ 159          
The following BLAST results are available for this feature:
BLAST of EY729958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CB13_SOLLC7.370e-6882.93Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA7.325e-6580.65Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY5.704e-1442.11Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.831e-1346.59Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.193e-1243.00Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH3.393e-1243.68Chlorophyll a-b binding protein 4, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-F02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729958 ID=EY729958; Name=EY729958; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGCCCACGCGTCCGGCCCTTATTTTTCGGCCTTTGCTTATT
CTCCAAAAGCAGAAGCAGAAAGCCGAAGCACTTTTAATTTATCGTATTGA
AGTAGAGAAACAAGAGGAAAAAAGAAAATTAAAAAATGGCAACCCAAGCT
TTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATTCT
TGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAGGTTCCT
TTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGA
CCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGCCT
CCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCA
CAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAAC
GGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGAATTC
TTGGCAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCAAAC
CGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTTACA
CACTTTTCGGTCTGAAAATGGCACTCATGGGATTTGCCGAAGCACGGAGA
TTCCAGACTGGGGCAATCCAGGAATCATGGGCAGGCAATACTTCCTCGGG
ATCGAGAAATACTTGGGAGGTTCNGGCGATCCGGCTTACCCTGGAGGAAC
TCTATTCAACCTCTGGGTCTGGGGAAAGATGAGAGTCTATGAAGGGTTCN
AGCTCAGGGAATTGAGGATGGAAATTGGCACTGGTGGCATCTTGGGTTAT
TGTTCAGGCTGTTGCGGAATGGGCTACAGAACTTGGATCTGGGTGACTGT
ACACAAGTTAAGAGCCAGTTAG
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