EY729444

Overview
NameEY729444
Unique NameEY729444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11842 contig Csv1_Contig11842:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = 2
Query:  200 ITLPPPAIVVN-GLDRLTIESYPKTLLGESGRLPKPNDNTCSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNSP 454
            + LP PA  V  GLDR  IESYP+ +LG+S RLP+PN+  CSICL +YE ++ +R IPECNH FH +C+D+WLR +A+CP+CRNSP
Sbjct:   54 LDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSP 139          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  164 RRRRPITEISTAITLPPPAIVVNGLDRLTIESYPKTLLGESGRLPKPNDNTCSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNS 451
            RR+            P   +V  GLD+ TIESY K  LGES RLP  N   C ICL EY  K+T+R +PEC+H FH +CID+WL++++SCPVCRNS
Sbjct:  202 RRQNAAITARNTTQQPRGVVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  224 VVNGLDRLTIESYPKTLLGESGRLPKPNDNTCSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNSP 454
            VV GLD  TI+SYPK L  E+        + C+ICLG+Y+ K  LR +P+CNH FH +CID WLR+N +CPVCR SP
Sbjct:  118 VVPGLDEDTIQSYPKILYSEAKG--PTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSP 192          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  224 VVNGLDRLTIESYPK------TLLGESGRLPKPNDNTCSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNSP 454
            VV GLD+  I SYPK      T    S       D TCSICL EY+  + LR +PEC HYFH  C+D WL++N SCPVCRNSP
Sbjct:  101 VVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSP 183          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  221 IVVNGLDRLTIESYPK---------TLLGESGRLPKPNDNTCSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNSP 454
            +VV GLD   I SYPK          + G+     +  + TCSICL EY  ++ LR +PEC HYFH  C+D WL++N SCPVCRNSP
Sbjct:   95 VVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSP 181          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = 2
Query:   38 TSKGTKYAI--IIGVGVPGTXXXXXXXXXXXXRKVGSGHESQLGRRRRPITEISTAITLPPPAIVVNGLDRLTIESYP-------KTLLGESGRLPKPNDNTCSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNS 451
            +S GT + I  I  +G+  T            +   + H+  + RRRR  ++    + +  P  V  GLD   I + P         + GE  +    N   CS+CL E++  + LR IP C H FH +CID WL+ NA+CP+CR S
Sbjct:   35 SSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSD-QNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQ--SKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTS 178          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  221 IVVNGLDRLTIESYPKTLLGE---SGRLPKPNDNT--CSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNSP 454
            + V GL    I+ +PK    E   S  L K +  T  CSICL +Y+    +R +P+CNH FH  C+D WLR++ +CPVCR SP
Sbjct:   92 VEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSP 174          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  224 VVNGLDRLTIESYPKTLLGESGRLPKPNDNT-CSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCR 445
            V  G+D+  IES+P  L  E       N    C+ICL E+E ++ LR +P C+H FHA CID+WL   ++CPVCR
Sbjct:   88 VRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCR 162          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  218 AIVVNGLDRLTIESYPKTLLGE--SGRLPKPNDNTCSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCRNS 451
            A V  GLD  TIE++P  +  E  + ++ K     C+ICL E+E  +TLR +P+C+H FH  CI  WL+ + +CPVCR +
Sbjct:   90 ATVARGLDAETIETFPTFVYSEVKTQKIGK-GALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTN 168          
BLAST of EY729444 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  233 GLDRLTIESYPKTLLGESGRLPKPNDNT-CSICLGEYEPKQTLRTIPECNHYFHAECIDKWLRMNASCPVCR 445
            GL++  IES+P  L  E   L        C+ICL E+E ++TLR +P C+H FHA CID WL   ++CPVCR
Sbjct:   94 GLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCR 165          
The following BLAST results are available for this feature:
BLAST of EY729444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
ATL5E_ARATH3.142e-2659.30Putative RING-H2 finger protein ATL5E OS=Arabidops... [more]
ATL1E_ARATH5.545e-2351.04RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]
ATL2I_ARATH1.413e-1854.55RING-H2 finger protein ATL2I OS=Arabidopsis thalia... [more]
ATL2M_ARATH2.411e-1853.01RING-H2 finger protein ATL2M OS=Arabidopsis thalia... [more]
ATL3K_ARATH4.112e-1848.28RING-H2 finger protein ATL3K OS=Arabidopsis thalia... [more]
ATL1A_ARATH1.369e-1331.97RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL5D_ARATH1.788e-1343.37Putative RING-H2 finger protein ATL5D OS=Arabidops... [more]
ATL4D_ARATH1.514e-1245.33Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
ATL5H_ARATH3.372e-1242.50RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL4C_ARATH3.372e-1247.22Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-017-A08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729444 ID=EY729444; Name=EY729444; organism=Citrus sinensis; type=EST; length=696bp
CCACGCGTCCGTCATAATTTTGACTGTTTAATTAGGTACGTCAAAGGGGA
CCAAGTATGCCATTATCATTGGGGTTGGAGTACCCGGAACATTGCTTATA
ATTGGACTTGGATGTTGTTACCTTTGCCGCAAGGTCGGGAGTGGTCATGA
GTCCCAACTCGGCCGGCGCCGACGACCAATCACGGAAATATCCACCGCAA
TCACCCTGCCGCCACCAGCTATAGTGGTCAACGGTCTCGACAGACTCACC
ATAGAGTCTTACCCTAAAACTTTGCTTGGTGAAAGCGGGCGACTGCCAAA
GCCAAATGATAATACTTGCTCAATATGCTTGGGTGAATATGAGCCTAAGC
AGACGCTAAGGACTATACCCGAGTGCAATCATTACTTCCATGCAGAATGC
ATAGACAAATGGCTTAGAATGAATGCATCCTGCCCTGTGTGTCGCAATTC
ACCCGATGGTTCTTCCTTAGCGACACCATCAACTACATCTACATCTACAT
CATCATCACGTTCTTCTTCAGTATTATCACCGTAGACGACAATACATACA
CAGCTTTTACTAGCCATTTTACGTAAAGTTTACTTTAATTTATATTTCTT
CCTGTGAAATTGATCGTATTCATTTTTATTCACCTTGCTGTGTACGTACT
TGGAATTAATAACTACAATTTGATTAATTTAAAAAAAAAAAAAAAA
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