EY729420

Overview
NameEY729420
Unique NameEY729420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729420_ssr28 microsatellite EY729420_ssr28:28..37. BLAST: Citrus ESTs to Populus V2 proteins
Homology
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BLAST of EY729420 vs. ExPASy Swiss-Prot
Match: EMF2_ARATH (Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 49/174 (28.16%), Postives = 75/174 (43.10%), Query Frame = 2 
Query:  212 MPGIPLVARETSSYSRSTDQMCREDARVHLSXXXXXXXXXSLVIICQPGRTLQHSSTACY*KIVISSRMFELPIHEKRNPRIQWSISCSKMVIEGYKPGSPFLVQFGREDIILGLQVPKFLWLLRLTEVGFEQFSCGCGGYSRVPPNFALPPNNKGSVEGEIFPISNFVV*FCG 733
            MPGIPLV+RETSS SRST+QMC ED+R+ +S         SL   C+P               +   R     I  K   RIQ ++  S  +  G +    F +      ++    V ++  + R +         G  G S+   NF LP  N+ ++E +   ++   + F G
Sbjct:    1 MPGIPLVSRETSSCSRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKIEAKHKRRIQMTVFLSGAIDAGVQTQKLFPLYILLARLVSPKPVAEYSAVYRFSRACILTGGLGVDGVSQAQANFLLPDMNRLALEAKSGSLAILFISFAG 174
The following BLAST results are available for this feature:
BLAST of EY729420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EMF2_ARATH8.519e-1228.16Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-F10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729420 ID=EY729420; Name=EY729420; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCTAACTCTCACTCTTATCTCTCTCTCAAAACGCTGCGGA
TTCCTGAAGGAACTTCTCGTTAACCTAAAGCTTCCTCAAGTTTACTTCCA
AATATCTAAATTAACTTTTCTTAATCTTAGGGTTTTTATTTCTATAAGGT
ATTTGAGTTGGCTTTGCTGAGGAGCTATGACGAATTCGAACTTCGGTGTT
ATCTANGAAGAATGCCGGGCATTCCTCTAGTGGCACGTGAAACTTCCTCA
TACTCCAGAAGCACAGATCAGATGTGCCGTGAAGATGCTCGTGTGCATTT
ATCTGCAGAAGAAGAAATTGCTGCTGAAGAGAGTCTTGTCATTATTTGCC
AACCTGGTAGAACTTTACAACATTCTTCCACGGCGTGCTATTAGAAAATC
GTCATTTCTTCAAGGATGTTTGAGCTACCAATTCATGAAAAGCGCAATCC
GAGAATACAATGGAGCATTTCCTGTTCCAAAATGGTTATTGAAGGTTACA
AACCCGGGTCCCCTTTTCTTGTGCAATTTGGCCGGGAAGATATTATTCTG
GGCCTACAAGTTCCCAAATTCTTGTGGTTATTGCGTTTAACGGAGGTGGG
TTTTGAGCAATTTTCTTGTGGTTGTGGGGGGTATTCCCGTGTCCCCCCAA
ATTTTGCTCTCCCCCCAAATAATAAGGGGTCGGTGGAAGGGGAAATTTTT
CCCATTTCAAACTTTGTTGTTTAATTTTGTGGTGGAGACCCAATTTTTCA
TTGGGGGTAGTTTTTTCCACCGGGCGCCTTGTGGAATAAAGGAGGGAAAT
AATCCCCTGGGGGGAAAAAAACACTTGGATCCTCGTGCAGTGTTTGGGGG
AAACTCCCCAATTTGGTTTTGGGGGAAGAG
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