EY729419

Overview
NameEY729419
Unique NameEY729419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8513 contig Csv1_Contig8513:36..599. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: GMHB_PSEAE (D,D-heptose 1,7-bisphosphate phosphatase OS=Pseudomonas aeruginosa GN=gmhB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.102e-22
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = -2
Query:    3 LIILDRDGVINQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVVATNQSGLARGLFDMDTLTAIHTKMRRELAAAGG 239
            L+ILDRDGVIN DSD ++K+ DEWI +P S++AIARL+QA WTV VATNQSG+ARG +D+  L A+H ++R  +A  GG
Sbjct:    5 LLILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGG 83          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: GMHB_NEIMB (D,D-heptose 1,7-bisphosphate phosphatase OS=Neisseria meningitidis serogroup B GN=gmhB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.429e-21
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = -2
Query:    3 VKLIILDRDGVINQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVVATNQSGLARGLFDMDTLTAIHTKMRRELAAAGG 245
            +KLIILDRDGVINQD D FVKS DEWI + GS+ A+A LTQA +TV VATNQSG+ R  F +  LT +H KM R +  AGG
Sbjct:    1 MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGG 81          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: GMHB_NEIMA (D,D-heptose 1,7-bisphosphate phosphatase OS=Neisseria meningitidis serogroup A GN=gmhB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.429e-21
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = -2
Query:    3 VKLIILDRDGVINQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVVATNQSGLARGLFDMDTLTAIHTKMRRELAAAGG 245
            +KLIILDRDGVINQD D FVKS DEWI + GS+ A+A LTQA +TV VATNQSG+ R  F +  LT +H KM R +  AGG
Sbjct:    1 MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGG 81          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_THIDA (Glycyl-tRNA synthetase beta subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glyS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.338e-16
Identity = 50/106 (47.17%), Postives = 60/106 (56.60%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-NLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KR+GN+LKKAEGE+GA  D                                  +L+ LA  + PVDAFF  +MV A+DPA+RANRLALL QLH  MN+VADISRLA
Sbjct:  595 KRVGNILKKAEGEVGASADPGRFVEAAERALFAALDEVAPRAAAAFGSGDYTASLQALAALKAPVDAFFDQVMVNADDPALRANRLALLNQLHRTMNRVADISRLA 700          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_DECAR (Glycyl-tRNA synthetase beta subunit OS=Dechloromonas aromatica (strain RCB) GN=glyS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.109e-14
Identity = 47/106 (44.34%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-NLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KR+GN+LKK E  + AV D                                + +L+ LA  R PVDAFF D+MV AEDPA+RANRL LL +LH  MNQVADIS+L+
Sbjct:  606 KRVGNILKKVENAVEAVVDNALLKEAAEIALHDALVEVVPQADAAFVTGDYSESLQALAALRAPVDAFFDDVMVNAEDPALRANRLGLLAKLHAAMNQVADISKLS 711          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_RALSO (Glycyl-tRNA synthetase beta subunit OS=Ralstonia solanacearum GN=glyS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.181e-13
Identity = 46/105 (43.81%), Postives = 57/105 (54.29%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KRI N+LKK +  IG+V                                    L+TLA  RE VD+FF  +MVMA+D A+R NRLALLG+LH LMN+VADIS+LA
Sbjct:  592 KRITNILKKTDITIGSVQPQLLREDAERALHQAVATSEPHVHDAFARGDFTTALKTLASLREAVDSFFDGVMVMADDTALRDNRLALLGELHGLMNRVADISKLA 696          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_LEPCP (Glycyl-tRNA synthetase beta subunit OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glyS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.632e-13
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGA-VNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KRIGN+LKKAEG + A ++                                 A+L+ LA  + PVDAFF D+MV AEDPA+RANRL LL  LH  MN+VA+++RLA
Sbjct:  607 KRIGNILKKAEGTVEARIDAALLAEPAEQQLAAALAQVQPGADALFAQGEYAASLQALAALKAPVDAFFDDVMVNAEDPALRANRLGLLATLHGAMNRVAELARLA 712          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_METFK (Glycyl-tRNA synthetase beta subunit OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glyS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.437e-13
Identity = 44/106 (41.51%), Postives = 56/106 (52.83%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEI-GAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KR+GN+LKK++  I  A+N                                  +L+ LA  + PVDAFF  +MV AEDPA++ NRLALL  LH  MNQVAD+SRLA
Sbjct:  602 KRVGNILKKSDSAIEAAINPALLQEDAEKTLAQALAQVQPQAQQAFAAGDYTGSLKALAALKAPVDAFFDHVMVNAEDPALKTNRLALLATLHQAMNQVADLSRLA 707          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_RALPJ (Glycyl-tRNA synthetase beta subunit OS=Ralstonia pickettii (strain 12J) GN=glyS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.489e-13
Identity = 46/105 (43.81%), Postives = 55/105 (52.38%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KRI N+LKK +  IGAV                                    L+TLA  RE VD FF  +MVMA+D A+R NRLALL +LH LMN+VADIS+LA
Sbjct:  592 KRITNILKKTDVAIGAVQPPLLKEDAERALHQSVVSAEPQVHDAFARGDFTTALKTLAGLREAVDTFFDGVMVMADDTALRDNRLALLAELHGLMNRVADISKLA 696          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_DELAS (Glycyl-tRNA synthetase beta subunit OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=glyS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGA-VNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KR+GN+LKKA+  + A V+                                 A+L+TLA  R PVDAFF  +MV AEDPA++ANRL LL  LH  MN+VAD+SRLA
Sbjct:  598 KRVGNILKKADQAVQAQVDAAVLAEVAEKDLYAALQSVAPKAQQQFAAGDYTASLQTLAALRAPVDAFFEHVMVNAEDPALKANRLGLLATLHEAMNRVADLSRLA 703          
The following BLAST results are available for this feature:
BLAST of EY729419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GMHB_PSEAE3.102e-2260.76D,D-heptose 1,7-bisphosphate phosphatase OS=Pseudo... [more]
GMHB_NEIMB3.429e-2162.96D,D-heptose 1,7-bisphosphate phosphatase OS=Neisse... [more]
GMHB_NEIMA3.429e-2162.96D,D-heptose 1,7-bisphosphate phosphatase OS=Neisse... [more]
SYGB_THIDA4.338e-1647.17Glycyl-tRNA synthetase beta subunit OS=Thiobacillu... [more]
SYGB_DECAR3.109e-1444.34Glycyl-tRNA synthetase beta subunit OS=Dechloromon... [more]
SYGB_RALSO1.181e-1343.81Glycyl-tRNA synthetase beta subunit OS=Ralstonia s... [more]
SYGB_LEPCP2.632e-1343.40Glycyl-tRNA synthetase beta subunit OS=Leptothrix ... [more]
SYGB_METFK3.437e-1341.51Glycyl-tRNA synthetase beta subunit OS=Methylobaci... [more]
SYGB_RALPJ4.489e-1343.81Glycyl-tRNA synthetase beta subunit OS=Ralstonia p... [more]
SYGB_DELAS7.658e-1343.40Glycyl-tRNA synthetase beta subunit OS=Delftia aci... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-F09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729419 ID=EY729419; Name=EY729419; organism=Citrus sinensis; type=EST; length=564bp
CTGCCGCCGGCCGCGGCCAGCTCGCGCCGCATCTTGGTGTGGATGGCGGT
CAGCGTGTCCATGTCGAACAGGCCACGGGCCAGGCCCGACTGGTTGGTGG
CGACCACCACCGTCCAGTCCGCCTGGGTCAGGCGGGCGATGGCCTGCAGG
CTGCCGGGCAGGGCGATCCATTCGTCGGGACTTTTGACGAAGGCGTCGCT
GTCCTGGTTGATGACGCCGTCGCGGTCGAGGATGATGAGCTTCACTGTGC
CAGCCTGGAAATGTCAGCGACCTGGTTCATCAGGGTGTGCAGCTGGCCCA
GCAGCGCCAGCCGGTTGGCGCGCACCGCCGGGTCTTCGGCCATGACCATG
ATGTCGGCGAAGAAGGCGTCCACCGGCTCGCGCGCCTGCGCCAGGGTGCG
CAGGTTGGCGGCGAANTCGCCGGCTGCCAGTTGCGCCTCGGCCTGCGGGC
GCAGCGCGGCGATGGCGGCGGCCAGCGCCTTTTCGGCGGGCTCGACCAGG
GCGGCGTCATTGACCGCGCCGATCTCGCCCTCGGCCTTCTTGAGCAAGTT
GCCGATGCGCTTGT
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