EY729401

Overview
NameEY729401
Unique NameEY729401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY729401 vs. ExPASy Swiss-Prot
Match: FECI_ECOLI (Probable RNA polymerase sigma factor fecI OS=Escherichia coli (strain K12) GN=fecI PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 3.132e-30
Identity = 74/165 (44.85%), Postives = 105/165 (63.64%), Query Frame = -1 
Query:  151 SLETLYGDHHGWLQRWLHHRLGNAADAADLAHDTFVRLLAKPVSRDFSNVCQARAYLRTAAGGLCVDLWRRREIEQAWRQTLAAQPEPMAPSPEHQAIIIETLLAIGAMLGRLSRKAATAFIMAQVDGAPYRDIAAGLDVSERMVKKYIAQAMLQCAL--LEAGL 639
            + E+LYG HHGWL+ WL  +L +A DA D+A DTF+R++   VS   S +   R++L T A  + VDL+RR  +E+A+ + LA  PE  APSPE +   +ETL  + +ML  L+ K   AF+++Q+DG  Y +IA  L VS   VKKY+A+A+  C L  LE GL
Sbjct:   12 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM---VSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL 173
The following BLAST results are available for this feature:
BLAST of EY729401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FECI_ECOLI3.132e-3044.85Probable RNA polymerase sigma factor fecI OS=Esche... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-D10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729401 ID=EY729401; Name=EY729401; organism=Citrus sinensis; type=EST; length=882bp
CCCGTCCAGCCGTAGTCTCTTGCTGTCTAAATCGAATGGGAGACGCAAAA
GGGGAACCCGTCCTTGTCCTACAAATGGGGCAAGGCCGACTTGCGTGGTC
ACCCACTGGCGATGGTCACTGGCGCTGCGGGAGAGAGGCTTTCAGCCGGC
TAGTCCAGCCTCGAGCAACGCGCATTGCAGCATGGCCTGGGCGATGTATT
TCTTGACCATGCGTTCCGAGACGTCCAGCCCGGCCGCGATATCGCGGTAA
GGCGCGCCGTCCACCTGCGCCATGATGAACGCCGTCGCCGCCTTCCGGGA
CAGCCGGCCGAGCATGGCGCCGATTGCCAGCAGCGTCTCGATGATGATGG
CTTGATGCTCGGGCGAGGGCGCCATGGGTTCGGGCTGCGCAGCCAGCGTT
TGCCGCCACGCCTGTTCGATCTCGCGACGGCGCCAGAGGTCCACGCACAG
GCCGCCGGCGGCGGTGCGCAGGTANGCGCGCGCCTGGCAGACGTTGCTGA
AGTCACGGCTCACCGGCTTGGCCAACAGCCGGACGAACGTGTCGTGGGCC
AGGTCCGCCGCGTCGGCGGCGTTGCCCAGGCGGTGGTGCAGCCAGCGCTG
CAGCCAGCCGTGATGGTCGCCATAGAGCGTTTCCAGCGAAGGAGGGGATG
AGTANGCCANGACGCTCATGCAAAAATCACCGTGGCGCGGGGTGACGTAG
GATCACGGTTTGTCCACCCTTGGAAAAATGATTTTATTATCGGGGTTGGC
GCAGTCCTTCCAGGCCCCATGACGGCCTGAAAGTATCTTGTTTTGATGCC
GGATGGCAGGGGTTTATTCCGCCGCTCGACGAGACTCAGCAATCTCAAAT
GATGGATCGGCGTTGGCCATGGCGGGCCCGAT
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