EY729396

Overview
NameEY729396
Unique NameEY729396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.615e-35
Identity = 70/195 (35.90%), Postives = 114/195 (58.46%), Query Frame = 1
Query:  235 ILIIGVLIACSLTHVRSDASDHRYKVGDVVPLYANKVGPFHNPSETYRYFDLPFCSPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVIEISARMDPHSLVDLTEEKEVDVEFMYSVKW 819
            +LI  + I  S   +   ++ H +K  D VP Y N VGP+ NP+ETY ++ LPFC P  I   K+  LGE+L GD  V + Y+  F+   ++   C   L  +D+ +F+ A+ + +Y +M YDDLPI+ F+G VD    T+    +Y+LY HI F+  YN D+VI ++   +   +++L+++ E+ ++  YS KW
Sbjct:    6 LLIYLICIIVSSIVLVESSNKHHFKENDEVPFYVNNVGPYSNPTETYEFYTLPFCKPSSI-SYKKTKLGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDIEKFKKAIGEYYYAEMIYDDLPIFSFVGTVDDSDLTN---IRYYLYNHIPFEFDYNGDQVIRVNIDTEHIKVIELSDQDEITLKLTYSAKW 196          
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.415e-35
Identity = 76/177 (42.94%), Postives = 110/177 (62.15%), Query Frame = 1
Query:  304 YKVGDVVPLYANKVGPFHNPSETYRYFDLPFCSPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEEKEVDVEFMYSVKWXE 825
            YK GD V LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  V C  +LS   V Q R A+E+ +YF+   DDLPI GF+G ++  G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  ++ + +   YSV+W E
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHTYSVRWSE 210          
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 4.460e-35
Identity = 75/177 (42.37%), Postives = 110/177 (62.15%), Query Frame = 1
Query:  304 YKVGDVVPLYANKVGPFHNPSETYRYFDLPFCSPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEEKEVDVEFMYSVKWXE 825
            YK GD V LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G ++  G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  ++ + +   YSV+W E
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHTYSVRWSE 210          
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.825e-35
Identity = 75/177 (42.37%), Postives = 110/177 (62.15%), Query Frame = 1
Query:  304 YKVGDVVPLYANKVGPFHNPSETYRYFDLPFCSPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEEKEVDVEFMYSVKWXE 825
            YK GD V LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G ++  G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  ++ + +   YSV+W E
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSE 210          
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.825e-35
Identity = 75/177 (42.37%), Postives = 109/177 (61.58%), Query Frame = 1
Query:  304 YKVGDVVPLYANKVGPFHNPSETYRYFDLPFCSPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEEKEVDVEFMYSVKWXE 825
            YK GD V LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G ++  G   P  +K  L+ H+ F + +  DR+I   +S R + PHSL  L  ++ + +   YSV+W E
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFRGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHAYSVRWSE 210          
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.825e-35
Identity = 75/177 (42.37%), Postives = 110/177 (62.15%), Query Frame = 1
Query:  304 YKVGDVVPLYANKVGPFHNPSETYRYFDLPFCSPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEEKEVDVEFMYSVKWXE 825
            YK GD V LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G ++  G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  ++ + +   YSV+W E
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSE 210          
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.453e-25
Identity = 66/196 (33.67%), Postives = 101/196 (51.53%), Query Frame = 1
Query:  253 LIACSLTHVRSDASDHRYKVGDVVPLYANKVGPFHNPSETYRYFDLPFC-SPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVIEISARMDPHSLVDLTEEKEV------DVEFMYSVKW 819
            L+   L   R+D  +H Y+  + V L+ N VGP+HN  ETY+YF LPFC      I    E LGE L G  L  +   + F+D+   A  C   L  +    F  A++  +++QMY DDLPIWG +G+ D  G+       Y+L+ + + +I +N +R+++          V+LT E +V       ++  YSVKW
Sbjct:   18 LLLLLLPRTRADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGE------DYYLWTYKKLEIGFNGNRIVD----------VNLTSEGKVKLVPNTKIQMSYSVKW 197          
BLAST of EY729396 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.204e-25
Identity = 66/196 (33.67%), Postives = 100/196 (51.02%), Query Frame = 1
Query:  253 LIACSLTHVRSDASDHRYKVGDVVPLYANKVGPFHNPSETYRYFDLPFC-SPDGIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSAVACRKKLSDQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDXEGKTHPSEYKYFLYKHIQFDILYNKDRVIEISARMDPHSLVDLTEEKEV------DVEFMYSVKW 819
            L+   L   RSD  +H Y+  + V L+ N VGP+HN  ETY+YF LPFC      I    E LGE L G  L  +   + F+D+      C   L  +    F  A++  +++QMY DDLPIWG +G+ D  G+       Y+L+ + + +I +N +R+++          V+LT E +V       ++  YSVKW
Sbjct:   16 LLLLLLPRARSDEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGE------DYYLWTYKKLEIGFNGNRIVD----------VNLTSEGKVKLVPNTKIQMSYSVKW 195          
The following BLAST results are available for this feature:
BLAST of EY729396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PHG1B_DICDI2.615e-3535.90Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_BOVIN3.415e-3542.94Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S1_HUMAN4.460e-3542.37Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_RAT5.825e-3542.37Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB5.825e-3542.37Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE5.825e-3542.37Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S3_HUMAN2.453e-2533.67Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S3_MOUSE3.204e-2533.67Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-D05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729396 ID=EY729396; Name=EY729396; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGTCTATCTATAATCGCATTTTCTATTTGCTCTTTCTGCCT
TAACAAACACTCTTGACATACATCTTAACAAACACTTTTGTTTCTTAATA
ATCACTCTTACTCAGATCTTTGAGTCATTTTATTTATAAATCCATGTGCG
ATTGAAAATTGCACTCCTCGTTCTCCTTCCTCAGGAAAAGAAAAGAAAAA
AATTCCAAAAACAATGAGCGATTCCTCTTTTCGAATTCTTATCATCGGGG
TTTTGATCGCCTGTAGCTTGACCCATGTGAGATCTGACGCCTCTGATCAC
CGCTACAAGGTCGGTGACGTCGTCCCTCTCTACGCCAACAAGGTTGGCCC
TTTCCACAACCCTAGTGAAACTTATCGATATTTTGATCTACCATTCTGCT
CCCCAGATGGAATAATAAAAGAGAAAAGGGAAGCACTTGGTGAGGTGTTG
AATGGGGACCGACTTGTTAGTGCTCCTTACAAACTCAACTTCAGAGACGA
GAAAGACTCTGCTGTTGCATGTAGAAAGAAGTTGTCCGACCAAGATGTTG
CTCAGTTCCGAAGTGCAGTGGAAAAGGACTTCTATTTCCAAATGTACTAT
GATGACTTACCCATCTGGGGGTTCATTGGCAAAGTTGACANGGAAGGAAA
GACTCATCCAAGCGAGTATAAGTATTTCCTTTACAAGCATATCCAGTTTG
ACATTCTTTATAACAAAGACCGTGTTATTGAGATCAGTGCTCGAATGGAT
CCTCATTCTTTGGTGGACTTGACAGAAGAAAAGGAGGTTGATGTGGAGTT
CATGTACAGTGTGAAATGGANGGAACTGACCCCCCTTTGAAAGAGGATGG
AAAGTACTCGCTCTCTTCTTCGTTGCACATCATTGGAAATCCTTGTTTTC
ATTATAAATCGTGT
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